RnoINT0137485 @ rn6
Intron Retention
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12020229-12022197:-
Coord C1 exon
chr3:12022052-12022197
Coord A exon
chr3:12020988-12022051
Coord C2 exon
chr3:12020229-12020987
Length
1064 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGCCTTTCCTCTCTCTGCAGGAG
3' ss Score
12.86
Exon sequences
Seq C1 exon
GTTTTGCAGTAGGCTGGGGACCCATCCCCTGGCTCCTCATGTCAGAGATCTTCCCTCTGCACATCAAGGGTGTGGCTACCGGCGTCTGTGTCCTCACCAACTGGTTCATGGCCTTTCTGGTGACCAAAGAGTTTAACAGCATCATG
Seq A exon
GTGAGTGCAGGCCCATGCCTTCCCCCTCACACTGTCAGCGAAGGCATGGGCCTTTCATTCTTCATTGCCAGAGATTGCCAGGTCATTGCCAGGTCCATGACCCTGAATGTAGGCTGAGAGCCCCTCGTGCCTGGAACACTGCCATCTCAGGGGTGACGTGGAGCCAGAGGTAAACAAAACAATGAACCTGGTCTGTGATCCCCTAAGTCTTAAGTCTGTATTGAGGTGAACGCACCTTCCTCATAGGCTGAGGGGGAGTCTGTGTCATTCAATACTTCACTTCCCTCGTAACCTTCTTGTGTTAGCTGAGGCTTGAGCCCACTGGCTTCCCCACTAGAGAGGTTCCGGGCAGATGAGCAGGCCATCTGCTCCATCACAGGTGCCCTTCAGACCTCCTGACATGTGCCATGCCCAGGCCTATTCAAGGCTTCAGAGATGGCAGCAGCTGGGTTGAATAGGGTTAGGGTCCATCTCCTGACAGGTGCCAAGAAGGCAGTGGGTGGCATGTATATCCAGCTAGCCAGAGACATGCTCGGGCACACAGGGTGCCCAGAGGAAGGCAAGCAGAGACCCACCGTGGAATGTGAGAGGGGACAGACAGCAAAGGACCTGGGGAAAGAAGCCTAGAAGGAGGAGACAGACAAACCCAACAGTGACCCAGGCCAGAGCACTGTTAAGAGGCTGAGAATGGGAGGGTCACCTGGTGTCCTCTCCCTCAGGTCACAAACTCCCCCTACCCCATCACTCTACCATCTCTCGAGAGTGATGGTTCTCCCTTTGTCATCACACGGAGAACTAACAGCATAGGACACTGGAAGGCAGGGCCAAAGAACGGGGTAAGGGAGAGGGGTAATGGCAGCAAGCCCGACATGGCCAGGACTCTCGCTGTCCCTTGACGTTGCTGATTTCAGGGCGGTGCCTTGGTTTCCCAGGCACACATCCCCTTGGGTGATAGTGAGCTACTCCCTATTTACCTGGGTGTCAGGCTACGGTCAGGGTGCCCCTGGATTTTGTGGGCCCTCTGTCCTCTGGCTACTCCACCTGTGCCTTTCCTCTCTCTGCAG
Seq C2 exon
GAGATCCTCAGACCCTACGGCGCCTTCTGGCTCACCGCTGCCTTCTGTATCCTCAGCGTCCTTTTCACGCTCACCTTTGTCCCTGAGACTAAAGGCAGGACTCTGGAACAAATCACAGCCCATTTCGAGGGACGGTGACGGACCCTTTCTGTGACTGGCAGCCCTGAGCTGAGCTGGCTTCGGGTTTCAAAAGGAGTGGAGTGGCCTCAGTGACCACAGTTTGAGCCCAGGGGCCCCCTGACTCCTCAGATCTCCGGGCCAGCTTTGTCCAGATCTCAACCCAGATCCACACCATGAGCTTCACCAGATTCTGAGGCTCTGCAGCCTGCTGCACACACAACACATCTGCGGAGCCATGCAGTCTCGCCTAACCCACGGGTCTCCTTCCTAAGACTAAAGCAACTGACGAGACTGCGGGCTCCTGGCTCTAGTGCTCTGGCTGGGCATCTTTGGGGTGCTTGGTCCTAAGCAACTGCCCATACCTCACTTGACTGGGGGATGAGAAAGGGACTTAGCCACATAAGATTTGGGCTCAGAAACAAGGTCAGGTGAGTCCAGGAAGAAAAGAGAATGTTCTTGTCTTGTCAACCAAGTCCTTCTCAGAGTGCCCAGAGACCTCCGGATTCACCTTGGGGTTAGCCAGCTTACCCATCACTTACAGGTTCTCTCCAGCTCTTCCCTGGTCTCAGTGTCCTGGATCATTAGTCACCAGGTCTTGTTGAGTTTCAGAAAATAAAAGGCCTCTTTCCGTTCAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274:ENSRNOT00000022327:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.7=100)
A:
NA
C2:
PF0008319=Sugar_tr=PD(9.2=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGTGTCCTCACCAACTG
R:
TGGTGTGGATCTGGGTTGAGA
Band lengths:
358-1422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]