HsaINT0152372 @ hg19
Intron Retention
Gene
ENSG00000136856 | SLC2A8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:HGNC Symbol;Acc:13812]
Coordinates
chr9:130167699-130170165:+
Coord C1 exon
chr9:130167699-130167844
Coord A exon
chr9:130167845-130169390
Coord C2 exon
chr9:130169391-130170165
Length
1546 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
GGCCTTTCCTCTCTCTGCAGGAG
3' ss Score
11.59
Exon sequences
Seq C1 exon
GCTTTGCGGTGGGCTGGGGGCCCATCCCCTGGCTCCTCATGTCAGAGATCTTCCCTCTGCATGTCAAGGGCGTGGCGACAGGCATCTGCGTCCTCACCAACTGGCTCATGGCCTTTCTCGTGACCAAGGAGTTCAGCAGCCTCATG
Seq A exon
GTGAGGGCAGGCTCCACCAGCACCGCGTTCGTGCAGTCAGCCGAGAAGCACTTTCTAAAACCACTTGTATTGCAGAAGACCCAGGGTCGTGGCCTTACATGCAGCCTGAGCCCCACCATGCCTGGGCCACTGGCCATCTTGGGCAAGGCGACGTGGAGGCAGATGGGCTAGGCCAGATGGGGAACCCAGGCTGTGACCCCTTGGGAGTCCTCTGCCTGTCTTGGCAGTCAGACAGCACAGCTGGCCTCTCCCCTTAGTGAACGTCAGGAAAGCGGGCCTTGAGCCTAAGGTCTTACATGGGAAGAGTTGACAGGGCTGGGCTGCAGCCCCACCCTGGCTACTTCCTTGCTGTGTGACCTTGGGTATGATGCTTACCTTCTCTGAGCCCGCTTCTTTGGCTGAAACTGGAGGAGAGTAACAGCAGCTTGCTCTTAAGACGGATGGGAGCATTAATTCAGTTCATCCTGTTGCTGCCTTCTCACGGATGGACTGGCACAGGTGTGGCCCCTGTCCCGGGGCTTCCCAGCCAACAGAGAGACAGTTCTGGGGTAGATGATCTGGTTGTTTGTTCAGTCATTTGTGCCCTCCAGGTCTCCTGGCATGTGCCATGTCCAGGCCCATTCAAGGCGCCAGGGAGAGCAATGAACAAGATGGACAGGGTCCCCTTTATGACAAGGACGGGAAAGGCCATGGCAGTGGTGGGAGAATGAACCCCAGTGGGGCTGGGTTAGGATGTGGTGGGGCGGGTCATGAGGGGCCAGCCTGGAGTCTGTGCAGAGCTTGGGACCCGCTTAGGCAGGACTGCCCGGGGAGCACATCGAGGGGGCCAGGCCGATGCCTGGGGGTGGAGATTACTTGCTGCAGCTGGGAGGGGATGCGCAGCAAAGGAAGGAGGAAAAGAAGCCAAGAAGGAGGTGACAAAGGACCTAACAGTCCTTTTTTAGGAGAGAAAATGTCCAAGAGGCCAAGAGAAGGCCTTCGAGGAGGGAGAGATCGCCAGGTCCCAGAGGACCAGGAGCTGAGAAGCACCTTTTTAGTTCTGGCACGTGGGAGGTCACAGTGGTGGTGGATGGCAGGGACAGGTTCTGACTGAAGGCCCCATGTGCTCCTGGGGCCATGCTCGCTTTGCCCTGTCTCACCCATTTCCACCACACTATGAAAGAACCCACCGGGGGCCTCAGGGTGGGGCCAAAGCTGAGGGTGGAGGGTTGGTCTGTGGGCCCTGGAGTCAGACCTGGAACAGGAGCCCAGCTGTCACTGGATAGCGGGTCTCTGGCCTTGAGGCAGTCACTTCATTGCTGTGAGCCTCAGTTTCCCCAGCCATACGACCTCGGTATCTTGGACAGTGCTCGGCCCAAGCCACCAGACTGGATGCCAGACTATCCTCCATGTCCCAGAGCTGGGTGGAGATAAAATGGGTGTGGCCTTGGGCAGGGCAGGCTGGGGTCAGGGGACTGGACCCCCTGGTGGCAGAGCTGTCTCAGTGATCGCGTGGGGCTTCCTGATCTCTCCCCGCGTCCACCCATGGCCTTTCCTCTCTCTGCAG
Seq C2 exon
GAGGTCCTCAGGCCCTATGGAGCCTTCTGGCTTGCCTCCGCTTTCTGCATCTTCAGTGTCCTTTTCACTTTGTTCTGTGTCCCTGAAACTAAAGGAAAGACTCTGGAACAAATCACAGCCCATTTTGAGGGGCGATGACAGCCACTCACTAGGGGATGGAGCAAGCCTGTGACTCCAAGCTGGGCCCAAGCCCAGAGCCCCTGCCTGCCCCAGGGGAGCCAGAATCCAGCCCCTTGGAGCCTTGGTCTGCAGGGTCCCTCCTTCCTGTCATGCTCCCTCCAGCCCATGACCCGGGGCTAGGAGGCTCACTGCCTCCTGTTCCAGCTCCTGCTGCTGCTCTGAGGACTCAGGAACACCTTCGAGCTTTGCAGACCTGCGGTCAGCCCTCCATGCGCAAGACTAAAGCAGCGGAAGAGGAGGTGGGCCTCTAGGATCTTTGTCTTCTGGCTGGAGGTGCTTTTGGAGGTTGGGTGCTGGGCATTCAGTCGCTCCTCTCACGCGGCTGCCTTATCGGGAAGGAAATTTGTTTGCCAAATAAAGACTGACACAGAAAATCAGGTCAGTGTCTCTGGGCTTTGTGCAAGCTCAGTTTGAAAAGGGTTTATTCCCATCACTGCCCAGGACACCCTGTGGCTTTACTTGCTCATGGTCAGCCAAGCTTACCCTTCACACTGAGAAGTCATTTCTGGCTACTTCCTTGGGCTCAGTTCCCTGGGTCATCAGCCATCAAATCTTGTTGAGTTTAAAAAATAAACAGCAAAAAAAAACAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136856-SLC2A8:NM_014580:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PD(16.3=93.5)
A:
NA
C2:
PF0008319=Sugar_tr=PD(19.4=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCGTCCTCACCAACTG
R:
GAGGGAGCATGACAGGAAGGA
Band lengths:
343-1889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)