HsaINT0152530 @ hg19
Intron Retention
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:HGNC Symbol;Acc:20305]
Coordinates
chr9:140127456-140127856:+
Coord C1 exon
chr9:140127456-140127567
Coord A exon
chr9:140127568-140127660
Coord C2 exon
chr9:140127661-140127856
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCCACTCTCTGCGGCCACAGGGC
3' ss Score
7.69
Exon sequences
Seq C1 exon
TGCTGACTGTCCGGGTGTCTGTGCCCATCATCATGGGTGTCAACGTAGGCACATCCATCACCAGCACCCTGGTCTCAATGGCGCAGTCAGGGGACCGGGATGAATTTCAGAG
Seq A exon
GTGAGTTGTGGGTGGAAGGGCTGGGCTGGGGCTGCAGTGGCAGCCCCAGCCCGGGCCCCCCCACCTGACCCTGCCCACTCTCTGCGGCCACAG
Seq C2 exon
GGCTTTCAGCGGCTCGGCGGTGCACGGGATCTTCAACTGGCTCACAGTGCTGGTCCTGCTGCCACTGGAGAGCGCCACGGCCCTGCTGGAGAGGCTAAGTGAGCTAGCCCTGGGTGCCGCCAGCCTGACACCCAGGGCGCAGGCGCCCGACATCCTCAAGGTGCTGACGAAGCCGCTCACACACCTCATCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569-SLC34A3:NM_080877:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.3=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(29.5=65.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGCACATCCATCACCAGC
R:
ACCCAGGGCTAGCTCACTTAG
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)