GgaINT0016679 @ galGal3
Intron Retention
Gene
ENSGALG00000003075 | SLC34A1
Description
NA
Coordinates
chr13:10214060-10215016:+
Coord C1 exon
chr13:10214060-10214171
Coord A exon
chr13:10214172-10214820
Coord C2 exon
chr13:10214821-10215016
Length
649 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACGCAGACTCCTCCATGCAGGGC
3' ss Score
5.01
Exon sequences
Seq C1 exon
TGCTGGAGGTGCGCTCTGCCATACCCATCATCATGGGCTCCAACATTGGCACCTCGGTCACCAACACCATCGTGGCCCTCATGCAGGCTGGTGACCCCTTAAGGTTCAAAAG
Seq A exon
GTGAGCACTGNTGAGCAAAGGGACTTTTAAGGGTGAGGGCTGCCCCGCACTGACACGCAGACTCCTCCAGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCACTGACACGCAGACTCCTCCATGCAG
Seq C2 exon
GGCTTTTGCTGGTGCTACAGTGCACGACTGTTTCAACTGGCTGTCAGTGTTGGTCCTGCTTCCGCTGGAGGTGGTGAGTGGGTACCTGCACCACGTCACCCGCCTGGTGGTGGCCACCTTCAACATCCGCAGTGGGAAGGATGCCCCTGCCCTGCTGAAAATCATCACGGAGCCCTTCACCAAACTCATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075:ENSGALT00000004859:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCGCTCTGCCATAC
R:
TGGATGATGAGTTTGGTGAAGGG
Band lengths:
302-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]