BtaINT0135284 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40242294-40242722:+
Coord C1 exon
chr7:40242294-40242405
Coord A exon
chr7:40242406-40242526
Coord C2 exon
chr7:40242527-40242722
Length
121 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
AATGTGGCCTCCCTGCCCAGGGC
3' ss Score
7.69
Exon sequences
Seq C1 exon
TGCTGGAGGTGAGCTCTGCCATCCCCATCATCATGGGCTCCAACATCGGCACCTCCGTCACCAACACCATTGTGGCCCTGATGCAGGCGGGGGACAGAACTGACTTCCGGCG
Seq A exon
GTGAGGGGGGAGTGGGGAGGGGCCTGTCCTTATTGGGGGAGGGTGGTCCCTCGTGCTAGGAGCCCCTAGTCTGAGCATCTCCCGGCTCCAGCCTGCTCTGCAATGTGGCCTCCCTGCCCAG
Seq C2 exon
GGCCTTCGCGGGGGCTACTGTACACGACTGCTTTAACTGGTTGTCAGTTCTGGTGCTGCTGCCCCTGGAGGCTGCCACAGGGTACCTGCACTGCATCACTCGACTTGTGGTGGCCTCCTTCAACATCCACGGCGGCCGCGATGCCCCTGACCTGCTCAAGATCATCACGGAGCCCTTCACTAAGCTCATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351:ENSBTAT00000027121:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.5=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(29.0=63.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATGGGCTCCAACATCGG
R:
GGCTCCGTGATGATCTTGAGC
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]