HsaINT1041996 @ hg38
Intron Retention
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr5:177387762-177388189:+
Coord C1 exon
chr5:177387762-177387873
Coord A exon
chr5:177387874-177387993
Coord C2 exon
chr5:177387994-177388189
Length
120 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
AATGTGGCCTCCCTGCCCAGGGC
3' ss Score
7.69
Exon sequences
Seq C1 exon
TGCTGGAGGTGAGCTCTGCCATCCCCATCATCATGGGCTCCAACATCGGCACCTCTGTCACCAACACCATCGTGGCCCTGATGCAGGCGGGGGACAGGACTGACTTCCGGCG
Seq A exon
GTGAGGGGGGCTGGGGGTTGGGGGCTCGTGCCTGGGGGAGGACAGCCCCAGATGCCAGGAACCCCAGGCGTGACTGTGCACTGGCTCGAGCCTGCCTTGCAATGTGGCCTCCCTGCCCAG
Seq C2 exon
GGCCTTCGCGGGGGCCACGGTGCATGACTGCTTTAACTGGCTGTCAGTGCTGGTCCTGCTGCCCCTGGAGGCTGCCACTGGCTACCTGCACCACATCACTCGACTTGTGGTGGCCTCCTTCAACATCCATGGTGGCCGTGATGCTCCTGACCTGCTCAAGATCATCACAGAGCCCTTCACGAAGCTCATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183:ENST00000324417:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGTCACCAACACCATCG
R:
GATGAGCTTCGTGAAGGGCTC
Band lengths:
251-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains