MmuINT0146265 @ mm9
Intron Retention
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55504029-55504461:+
Coord C1 exon
chr13:55504029-55504140
Coord A exon
chr13:55504141-55504265
Coord C2 exon
chr13:55504266-55504461
Length
125 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
AATGTGACGTCCCTGCTCAGGGC
3' ss Score
6.74
Exon sequences
Seq C1 exon
TGTTGGAGGTGAGCTCCGCCATTCCGATCATCATGGGCTCCAACATCGGAACCTCTGTCACCAACACCATTGTGGCCCTGATGCAGGCAGGGGACAGGACTGACTTCAGGCG
Seq A exon
GTGAGCTGGGGAAGGAGGTTCGGGCCTCACACTTGTTGGGGGAGAGGGCAGAACTGAGTGCTGGGGCCCCTCAGCTTGGGCACACCTTGGGTCTAGGTGTCCCACAATGTGACGTCCCTGCTCAG
Seq C2 exon
GGCTTTTGCAGGGGCGACCGTGCATGACTGTTTTAACTGGCTGTCTGTTCTGGTCCTACTGCCCCTGGAGGCTGCCACGGGCTACCTACACCATGTCACCGGGCTTGTGGTTGCTTCCTTCAACATCCGAGGTGGCCGTGATGCCCCCGACCTTCTCAAAGTCATCACAGAGCCCTTCACAAGACTCATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490-Slc34a1:NM_011392:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.5=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(29.0=63.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATCATCATGGGCTCCAAC
R:
TGACTTTGAGAAGGTCGGGGG
Band lengths:
253-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: