DreINT0150642 @ danRer10
Intron Retention
Gene
ENSDARG00000028824 | slc34a1a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
Coordinates
chr14:828693-830748:-
Coord C1 exon
chr14:830637-830748
Coord A exon
chr14:828889-830636
Coord C2 exon
chr14:828693-828888
Length
1748 bp
Sequences
Splice sites
5' ss Seq
GCGGTACAA
5' ss Score
2.55
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGGC
3' ss Score
9.09
Exon sequences
Seq C1 exon
TGCTGGAAGTGAAATCTGCCGTCCCCATCATCATGGGCTCCAACATTGGCACGTCGGTCACCAACACCATCGTGGCTCTGATGCAGGCGGGGGAGAGGAACGAGTTCAAGCG
Seq A exon
GTACAAACTCTGTTTCATCAGGGTCTAATCAAACACTCTGAATCACTTAAAGAGGAGAAAATGATCTTATTAGCCTTTTCAAAGACACACGCATAGAGATTCTATACAATCAATCAATCAATTAATCAATCAACAAATCAATTGATTGATCAATCAATCAATAAATAATTCAATCTTCAAAACATTTCTGATCTTGTTGTCCCATCTATTTATCAATGAATCACTCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCTGTCAATCAATCTGTCAATCATTCTGTCAATCAATCTGTCAATGAGTCAGTTAGCCAATCACTCAATGAATTTGATCATCAATCAGTCAGTCAGTCAGTCAATCAATCAGTCAATCAGCCTATCAATCAATCAATCAATCAATCAATCAATCAATCTGTTAATTAATCAGTCAGTCAATCAATCAATTTAATTGGTCATCAATCTAGTCAATCAATCAATCAATCAATTGGTCAATCAATAAATCAATGTTTAAAACATTTCTGATCTTGTTGTCCCATTTATTTATCAATAAATCCATTATCACTCAATAAATTAATAAACGAATCAATCAATTAATCAATCTATTAGTCAGTCAGACAATCAATCAGTGAATTTGGTCATTTATTAATCAATTAATAAATCAATCAATTAATCAGTCAGTCAGTCAATTTGCCAAAAAGTCAATTATTCAATCAAACAATCAGTCAATCAATCAATCAGTTATTTAATCAGTCAGTCAATCAATCATTTTGTCAATCAGTCAGTATGCCAATTAGCCAATCAATCAAATAATTTAATTGGTCATCAATCCAATCAATCAATTAATCATGTTCAATGTTCAAAACATTTCTGCTTTCTAGTTATCAACGAATCGCTCAGTAAATAATAAATAAATGAATGTATCAATCAATCAGTCAGTCAGAAAATCAATTAATCAATCTGTTAATTAGTCAGTCAATTTGTCAGCCACTTAGCCAAATAATCAATTAATTGAATTAATTATCAATCCAATCAATCAATTAATCAATCAATCAATCAATCAGTCAATTGGTCAATAGATCAATCAATCAAGAAAGTAAGTTAGTACGTCAGTCAGTTAATTTGTCAATCAATTCATTTGTTGTCCGTCAATCAGTCAATCAATCAATCAATCAAATAATCTGTCGATCATTTAATCAATCAGTCGATTAAACAGTCTGTGAATCAATCAATTATTCAATTTCATCATCAATCAGTCAGTCAGTCAATCAACAAATGAATCATGCGAGCAATTAATCAATTCATTATTCTATCAATCAATCAATTGATTGATCAGTTAGTCAATCAAAAAAATCAATCATCATTTTATCACTCTACCAATCAATCAGTGATCAATGATTTATTTATTTTATTTTCAGCGCCCTGACAACATGGACTTTTCATAAAAACAACAGCAGATTGTAGATTTACTGTGTGAACGTCTCAGAAGCAGAAGACACATGCTTGATTTCTAGCTTAGGCCTATGATAAACCCATCAGCCCTGCATCAGCACAGCAGGTAATGATGAGTGAGTGACCGACCTGCTGTGCTGCTCAGACACAGACCTGCATCATTCATCATTTCCATTACATTACAGATCAAATGTGCTGCACATTCCTTCCAGAACATCTCATTATTTGGGGATAATTACGAGGCATCACTGATGTTGTGTGTGTGTGTGTGTGTGTAG
Seq C2 exon
GGCATTTGCGGGAGCAACGATCCACGACTGTTTTAACTGGCTGTCTGTGCTGGTTCTGCTGCCGCTGGAGGTGTTTTCGGGTCTGCTCAGTTTTCTGGCCAGAGTGACGGTCAGCAGCTTTCAGATGCACAGCGGAGAGGAAGCTCCAGAGCTGCTCAAGACCCTCACTGAGCCCTTCACCACACTCATCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028824:ENSDART00000148687:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(24.7=100),PF061616=DUF975=FE(29.6=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(31.3=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAAGTGAAATCTGCCG
R:
GATGAGTGTGGTGAAGGGCTC
Band lengths:
302-2050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]