BtaINT0135306 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046379 | SLC34A3
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr11:105868381-105868776:-
Coord C1 exon
chr11:105868665-105868776
Coord A exon
chr11:105868577-105868664
Coord C2 exon
chr11:105868381-105868576
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTGCCTCTGTGTGACTCCAGAGC
3' ss Score
7.01
Exon sequences
Seq C1 exon
TGCTGACCGTCCGGGCCTCTGTGCCCATCATCATGGGTGTCAACGTGGGCACATCCATCACCAGCACCCTGGTCTCGATGGCACAGTCAGGGGACCGGGACGAGTTTCGGAG
Seq A exon
GTGAGCGGGGTAAGGGGCAGGCAGGGGCCGGGGCGGCGATCCGGATGGTGGCCAAGACCAGCACCCAGCTGCCTCTGTGTGACTCCAG
Seq C2 exon
AGCCTTCGGCGGCTCGGCTGTGCACGGCATCTTCAACTGGCTCACGGCGCTGGTCCTGCTGCCGCTGGAGAGTGCCGCGGCCCCCCTGGAGAGGCTCAGTGCGCTGATCCTGGGCACCGCCAGCCTGCAGCCGGGGGGGCACACGCCCGACATCCTCAAGGTGCTGACCCGGCCGCTCACACACCTCATCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046379:ENSBTAT00000063824:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.2=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(29.9=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACGTGGGCACATCCATC
R:
CACTGAGCCTCTCCAGGGG
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development