HsaINT0152533 @ hg19
Intron Retention
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:HGNC Symbol;Acc:20305]
Coordinates
chr9:140128315-140128728:+
Coord C1 exon
chr9:140128315-140128393
Coord A exon
chr9:140128394-140128560
Coord C2 exon
chr9:140128561-140128728
Length
167 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGG
5' ss Score
3.69
3' ss Seq
TGCCCCTGCCCTGCCCCCAGGCC
3' ss Score
11.24
Exon sequences
Seq C1 exon
ACCCAGGAGAACAGCAGCTGTGGCGCCTTCGGCCCGTGCACAGAGAAGAACAGCACAGCCCCGGCGGACAGGCTGCCCT
Seq A exon
GTGAGGCCCGGCCCACCCCAAGCCCCCTACACCCCCCACACTCCCCCTCACCGGCCCCTACATGGAGAGGAACAGCACAGCCCCGGCGGACAGGCTGCCCTGTGAGGCCCGGCCCACCCCGGCCCACCCCCCAGGCTCCCCCTCACCTGCCCCTGCCCTGCCCCCAG
Seq C2 exon
GCCGCCACCTGTTTGCGGGCACGGAGCTCACGGACCTGGCCGTGGGCTGCATCCTGCTGGCCGGCTCCCTGCTGGTGCTCTGCGGCTGCCTGGTCCTCATAGTCAAGCTGCTCAACTCTGTGCTGCGCGGCCGCGTGGCCCAGGTCGTGAGGACAGTCATCAATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569-SLC34A3:NM_080877:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGAACAGCAGCTGTGG
R:
CCGCATTGATGACTGTCCTCA
Band lengths:
244-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)