BtaINT0135309 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046379 | SLC34A3
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr11:105867605-105868000:-
Coord C1 exon
chr11:105867913-105868000
Coord A exon
chr11:105867802-105867912
Coord C2 exon
chr11:105867605-105867801
Length
111 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGG
5' ss Score
3.69
3' ss Seq
CTGCCCCCGCCCTGCCCCAGGCC
3' ss Score
7.81
Exon sequences
Seq C1 exon
ACCGCGGGAAACAGCAGCTACTGCGGAGCGGCGGCGGGGGGCCCCTGCCCTGGGAAGAACGGCTCTGCGTCTGAGGAGCCCTTGCCCT
Seq A exon
GTGAGGCCCGGCCCCGCGCGCCGCCCCGCGCGCCCCCGCCAGCCCCCGCCGCCCCGCGCGCCCCCGCCGCCCCGTGCAGCTCGCGGCTCACCTGCCCCCGCCCTGCCCCAG
Seq C2 exon
GCCGCCACCTGTTTGCGGGCACGGCGCTCGCGGACCTGGCCGTGGGCCTCATCCTGCTGGCCGCCTCCCTGCTCGTGCTCTGCTCCTGCCTCGTCCTCATTGTCAAGCTGCTCAACTCCACTCTGCGGGGCCGCGTCGCCCAGGCCGTGAGGACGGTCATCAACGCCGGTGCGGCGGGAAGCGGGGCCGCCGCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046379:ENSBTAT00000063824:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAACAGCAGCTACTG
R:
CGTTGATGACCGTCCTCACG
Band lengths:
249-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development