RnoINT0137632 @ rn6
Intron Retention
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2450573-2450907:-
Coord C1 exon
chr3:2450820-2450907
Coord A exon
chr3:2450741-2450819
Coord C2 exon
chr3:2450573-2450740
Length
79 bp
Sequences
Splice sites
5' ss Seq
TCTGTTAGT
5' ss Score
-6.17
3' ss Seq
ACCACTCTCCCCTGCCACAGGCC
3' ss Score
9.68
Exon sequences
Seq C1 exon
CCCCAGGGAAGCAGTGAGGAATGCGACCTCTCGGGCTCTTGCACAGAGAGGAACAGCTCAGCATCTCCAGGAGAGGACAGACTGCTCT
Seq A exon
GTTAGTACCTCCCCCTGCCCCACTCCTACCCCGCTTCCTGCTCTGACTCCCTCCTACTCACCACTCTCCCCTGCCACAG
Seq C2 exon
GCCATCACCTGTTTGCAGGCTCAGAGCTCACAGACCTGGCTGTGGGCTTCATCCTGCTGGCAGGTTCGCTGCTGGTGCTCTGTGTCTGTCTGGTCCTCATCGTTAAACTGCTCAACTCTGTGCTGCGGGGTCGCATTGCACAGGCTGTGAAGACCGTTATCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451:ENSRNOT00000014060:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(19.7=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGGAACAGCTCAGCA
R:
GCAGCACAGAGTTGAGCAGTT
Band lengths:
172-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]