HsaINT0153493 @ hg38
Intron Retention
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4 member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr3:27433916-27436548:-
Coord C1 exon
chr3:27436388-27436548
Coord A exon
chr3:27434105-27436387
Coord C2 exon
chr3:27433916-27434104
Length
2283 bp
Sequences
Splice sites
5' ss Seq
CAGGTTATA
5' ss Score
1.5
3' ss Seq
TTTTTTTTTTCATTGAATAGATA
3' ss Score
7.49
Exon sequences
Seq C1 exon
ATGGCTGAAATTTGAAGAGGATGTTGAAGATGGCGGTGACCGATGGAGTAAACCTTATGTGGCAACTCTCTCTTTGCACAGTCTTTTTGAACTAAGGAGTTGCATCCTCAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTAGATGAAATAGCAG
Seq A exon
GTTATAGTAAACTGACTTTTAAAAAATATGTAAGGTGTAGTGGAATTTTAGACATTCATTTAACAACTATATGCTGAGCTTCTATTCTGTGGAGTGCAGTATAAGGAAATAAGATAGAATTTTTGTCTTTGATAAATTTGCAGATGAGATTAAATTAAACCGACATAAGTGTAGTATCAGTAAGAGAGTGAATAGTGGCACAAGCGAATACAGAGTCTGTTCTGTGGAAATTCAGAAAAGAGTTTTTTGTTTCCTTGTTTTTTGGAATGGGGATGTGGGGAATAGCCACAGAGAACATTAATTGTACAAGTTACTCATAAAATGTGAACACATGGGAACCAAGGAGTAGGTGATACAAGAGAAAAAGTATTTTAAGGAAGAGTAAAGAAAAGTCTAGAGAAGTATAGACAGGAATCTCAGGAAAGTCAGTTCTGTGTGAATATACAGATTTCTTCAGTAGTGTTAGGAGGTATGTTGGGAAACCCAGTTAGAGATGAGATTGTGACTAGCCTTGAATTATTGGATTTTTTTTTTAAGGGGGGGATCACAGGGTCTCTCACTGTCATCCAGGCTGGATGGAGTGCAGTGGCACGATCTTGGCTTACTGCAGTCTCCGTCTCCTGGGCTCAAGTGATCTCCCACCTCAACCTACTGAGTAGCTGGGACCACAGGTGTATACACCACCACGCCTGGCTAATTTTTGAATTTTTTGTAGAGACGGGTTTTCGCCATGTAGCCCATGCTGTTCTTGAACTCCTGAACTCAAACAACCTGCCCACTTTGGCTTGCCAGAGTTTTGGGTTTACAGGTGTGAGCCACGGTGCCTAGCCAAGAAATAGGATTTTATTTGGTAGGCATTTTGGTGGTCTTGATGGTTTTTAAGTTGAGGAATAGTGTGATATGAGATACACATTCAGGAAGATCATTCTGGCAACAGAATGTAGGGTGGCTTTGGATTAGGAAGAGTTTAGAAGCAAGTAGGCCAGTTATTGGCTAGGAACAGTCTAAGCAAAGAAAGAGCTCTGGTAGGTTGAGCAATGAAAATGAAAGGGGGAGATTTGAAGGATAATGTGGAGGTAGAAAGTAGAAAAAGGCAGCTGTAATCAGCTTTTTGTCCACTAACTAAAATTAATAAAAACCAAAATTAACTTTGGTAGTAATGAATTTGATGGTGGGACTACCATTGTAGATTGCTCCCATGGAAAAACAAAAAATCTGTAGTATTTAATCTTCAAGAGAACCATGAACTTAATACAATTTCTCAGGCTAGAAATACTTCAATTTTAGCCTACTGTTAGATTTAACTGTGTGCTGCAAATATTTGAATTGTCCTTACTTTCTTGTCTCACATGAATAACTGAAAAATTAAGGTTGGGAATATTGAATTTGTATAATACATATGGGTTTCAGACTTTGGTTTGCAATTATCACATAATACCATGTAGTACTTTTAGTATATGTTGTATAATCTAGTGTTCATTTGTTTGCTAAACTGTAGCTGTTGTGTTAAGGTTAACAGTTTACCTATTAGGCTGGTCCTTCCAGGGTTTTTTTTAGAGTAACCATGTAGTTTTGAAAATTTGACCCTCTTCTTCCAAGTTAGTACCACTATTTAAAACTATTAATATATATTTTATAAATTAAAAAGTTTAATCACCTCAGTAATGTATAAAATGGCATTGCCATCAGTTTCCCCATTCCCCACATCCCTTTCACAACCTGATTTTACTCCTCTTCCTAGAACTTATGACCTCATGACGTTTTATCTGTTTGTATGTTGGTTTCTCTACCTCTCGAAGAGAGCAGAAACTTGGCTCTGTTTTGTTATTTTTAAATTGCTGTATTCCCAACACACAGCGGACGCTCAGTGAATAGTTAATGACTGAGTGGGTCCTGATATTCATCTGCTGGAACAGTTTTGGGGGAGAATATGAGGTTTGGCAATAAAATACCTTTACATCTTAGGAAGCCAGTATTATTGAATATTCAGCTTAATAGAATTTATTGTATTCATACAGGGAAGCACTTTCAGCTATAGGAAGGCTATTAGTATATAATAGTAGCCTCTTTATAAATAATAGTATTTATTAAAATAAGGCGGTCTTTGTAATTCATTTTTATTGGTTGGATAATGTTCATTTCTGCATTGATTATTTGTGACAGAATAAAACTTTCTAGAGCTATTTAAGGTTCTAATTTTTGTCATAAGGTTTCACTCACAGTTTATTCCTATATTATGGTCATCTGAGTGTTTAGTAATTTATTTTTTTTTTCATTGAATAG
Seq C2 exon
ATATGGTATTAGACAACATGATAGCTTCTGGCCAATTAGACGAGTCCATACGAGAGAATGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAGAATGAGAAAAGATTCACCAGTCGGATTCCTCTTGTTCGATCTTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867:ENST00000295736:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.186
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(12.0=85.5)
A:
NA
C2:
PF075658=Band_3_cyto=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains