GgaINT0101743 @ galGal4
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39054159-39056545:-
Coord C1 exon
chr2:39056385-39056545
Coord A exon
chr2:39054348-39056384
Coord C2 exon
chr2:39054159-39054347
Length
2037 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGCA
5' ss Score
-3.12
3' ss Seq
CTGCTGTTGCTGTTTTGTAGATA
3' ss Score
9.11
Exon sequences
Seq C1 exon
GTGGCTAAAATTTGAAGAGGATGTTGAAGATGGTGGTGATCGTTGGAGCAAGCCTTATGTAGCAACTCTGTCTCTACACAGTCTCTTTGAATTGCGAAGCTGTATTCTTAATGGGACGGTCATGTTGGACATGAGAGCAAACACACTAGATGAGATAGCAG
Seq A exon
GTTGCAGCAAAACTTTTTTTTTTTAAATACTTTATTTCTAAATTTTAATCTCTGTTTGAAATGCTTTTTTAAAGATATCCTTGAAAATAAAGTATTGAAGAAATAGGTATGTACACACTTTATGCAGTCTTTTTCATCTGGTTAAAAAGAGCTGGTCCTTCACTTAGAAGGAGCTCTGCTGGTTGAATAGCACCTCCTTTATTTATATGTTTTTCGGATGAGGTCTAGAATTTACCTTTGTTCTAATTCCTGAATATGTTCTTTGTCTTTGTTTCTACAGATGAAGTATAAATATATTCCAGAGCATTTTAGGACTTATTTGTTCTCTTTAGTACCATAATTATTAATCATAACTTGGCTGATGTTAACTTGATGCCATTAGTGCAATTGAGTGTTGCACATCTGCTAGGTTTTTTTTCACCTTTGTAAGCGGTGAGCAGAAATAAATTATATGTTTGACCTATTATGTTGAATGGCCTCACTAATCACATGGTCACTCTGAGTCCTACAGAAACATCTTGGAAAGCTATTTTTTTTAATCAACGTTATACTTGTTTAACCTGAATGCCTTTTGAACTAGTTTTACCTTATTTTCCTAGTATCTCTTGCTGCAGGTGCCACACAGTTGACTGCCTGCTCAGGAATCATGCTAGGCTTAGGGCTGCCCTTGTCCCTGTGAGGGACAAAGTGTTTTGGCATAAAAAAGTTGACACAGCTTGAATTTTTTTTTTTTAAGTCTTCAAATTTCTCTGAGGAAGTTGGTGTTCCCTTCCTATTTTCCTGACTTGCTAAGGAAAAGTGTACGTGGGTTTGTAAAGGCAATGTTTTGGTCATTGATTGAGCTTTATTAAATTAATTATAGAAGTAATCTTAGTTTATAAGAAAGATAGTTACTGCTTAATTCTGTGTAAACAGTGCTTTTTTAGGTGTAGCAAACAGTAGCAAATATTTTAGGTGGATCTGTAACATATGAAGAGATTGCATAAATTTGTTTTAAGTTAATTTTTGGTGCCATTATGAAAGTATACTCTACCAAGGATTATCATCCTACACAAGACTGTAAGTGTATTGTCTCTGTTCTCTGAATTAAGAATGCCTAAAGGTGATCATAGTTCTCCCTCGAACAGGTCAGGAGTTTCTTTTGAGAAGCGATAGCATAAGACTGCGTGTTAACAGTGATTCCCAAAGGAGGTTGTACTGTACTGGCAAAGACTTCATGGCATATAATTTTGCTTGTAAAGCATTCTGAGCCATAACCTTTTTCATTGTGAAAAGTTCTCTGCAATTATGGTTTATCAATGTAGTTTATTGATGCATGAGTTAAGAATAGAAAAATATGTTGAAAAGTTGTGTCACATAGGGTAACGTTGGTTTGTGCAGGTGTGCGTGTTTCTAAATAAAAATAACTACATAATCACAGCAGACTTTCATCTGTGTGAACATGCTGATGAGGTGCACCTTTGAAACTTGATACTGTTGATTCATCAGTTTTAGATGATAAAACTAGCTTTCATTTTACATTTCCTTTTCTAAAGTATGTGCATCACAAGCCTCAGGAGTTTGAGTCATCTGAAAGTGACAGAAGTTACGAAATTCATCCCATGATCCTACAACTTTCCTTCTAGTGTAGTTGTATACTTTCAAAATAGGGAACACCAGGTTAGGGCTTGAAGATGTCCCTTTTGCATTTTTTTTTCTTTGTGTATTCACTTTTAGTTGAATACACAGGCGTTTCTTTTTTAAAAGGAAGTTGCAATTGAAGGTAAACCATAAAATATTAAGCAACTTGTTTCTTAAAATGATAGTACTAGTATTTTTGGATCTACATTCTGTTTTACTTATTTACTCATTTAATGACATCTTCGAAAATTTGTTGTGAATTCTTGAAGATGGCACTGACATTGAAAAGGCACTTCTCTTTATTATATAGTTCCTATTTTTTCATATGATTTGTTGCAACTAATTACGGTGTTTGGGTGTGTGGAAGGATACCTACATATATAAAAATTTCATTTTTCTGCTGTTGCTGTTTTGTAG
Seq C2 exon
ATATGGTCTTGGACAACATGATTGCTTCTGGCCAACTGGATGAATCGATAAGGGAGAATGTGAGAGTGGCACTTCTAAAAAGGCACCATCATCAAAATGAGAAAAAATTCAGCAATCGGATTCCCTTGGTTCGGTCTTTCGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAACGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(17.5=85.5)
A:
NA
C2:
PF075658=Band_3_cyto=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]