BtaINT0136158 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1817005-1820580:-
Coord C1 exon
chr22:1820420-1820580
Coord A exon
chr22:1817194-1820419
Coord C2 exon
chr22:1817005-1817193
Length
3226 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
GTGTATTTTTCTTTGCCTAGATA
3' ss Score
7.47
Exon sequences
Seq C1 exon
ATGGCTGAAATTTGAAGAGGACGTTGAAGATGGTGGTGACCGGTGGAGTAAACCTTATGTGGCAACTCTTTCTTTACATAGTCTTTTTGAGCTAAGAAGTTGCATCTTAAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTCGATGAAATAGCAG
Seq A exon
GTGACAGCAAAGTGACTTCTTTATGTTTAAATTGCAGTGAAGTTGAGATAAATAAGGAAAATAAAGTGGAATTCTAGACCGTTGATTTGATGGTTACATGTTGAGCTTCTGTTTTGTGCATGAAGCTGTGTATGAAGAGTTAGACGTAAATAACCCCTTTTTATCCTTGGTAAGTTTGGAGTCTGAAAGATGAACTGAGACAGATGTAGCTACAGTGTCAGGAAGACTGTGACTCGTGCTGTAAGCAAGATCCGGAGTCTGCTCTTTGGCGGTGCAGAGGAAGGAGCTTTTCATTTCCTTGTTTCTGGACTGTGGTATCTGGGGAGACCTAAAAGGTACATTAACTGTAACGTATCCATAGAATGTGAACATGTGGCAGCAAGGGGAATGTGGTGTGAGAGGAAAAAAGCGTTCTGACGAGGAAGAGAAGGAAGAGAAGGCTGGAAAGTACCAACAGGTATGATCTCAGGAAGGTCAGTTCTCTGTGAGTACACAGATTTCTTGAGATTTGCAGGAAAATAAATTAGAGGTGAGTTACGACTATCTTTGAATTACTGGGTTAAGAAATTGGGTTTGATTTGATAGGCATTTTGGTTCTCAGTGATTTTTAAGTACGAGAATATTACCAGATGTGGAACAACTGACTGGTCCAGTATTGGGAATAGGATACAACCAGGCTGTGTATTCTCACCTTGTTTATTTAGCTTACACGCAGCGTACAGCATGTGAAATGCTGGGCAGGATGAATCACAGGTTGAATTTAAGTTTGCCAAGAGAAATATCAATAACCCCAGATAGGCAGACGGAGAAGGCAGTGGCACCCCCTCCAGTACTCTCGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCGAAGAGTCGGACATGACTGAGTGACTTCACTTTCACTTTTCTCTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTTTGCCTGGAGAATCCCAGGGACGGCGGAGCCTGGTGGTGGGCTGCCATCTCTGGGGTCACACAGAGTCGGACACGACTGAAGCGACTTAGCAGTAGCAGCAGCAGATATGCAGATGATACCACTGTAATGCCAGAAAGTGAAGAGGAACTAAAGAGCCTCTTGATGAGGGTGAAAGAGGAGAGTGAAAAAAGCTGGCTTAAAGCTCAACATTCAGAAAACTAAGATCATGGCATCTGGTCCTACCACTTCATGGCAAGTAGAAGGGGAAAAAGTGGTAATAGTGACAGATTTGACTTTCTTAGGCTCCAAAATCACTGCAAACTGACTGTAGCCATGATACTAAAAGGTGTTAACTTGGAAGGAAAGCTTTGCCGAAAAGGTCCGTCTAGTCAAAGCTATGGTTTTCCCAGTAGTCATGTATGGCTGTGAGAGTTGGACCATAAAGAAAGCTGAGTGCCAGAAAATTGATAATTTCGAATTGTGGTGCTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCACGGAGATCAAACTAGTCAATCCTAAAGGAAATCAGTCCTGAATATTCACTGGAAGGACTGATGCAGAAATTCCGATACTTTGGCCACTTGAAGCGAAAAGCCAACTCATTAGAAAAGATCCTGATGCTGAGAAAGATTGAAGGCGAAGGGAGAAAAGGGCGACAGAGGATGAGATGGTTGAATAGCATCACCAACTCAATGGGCATGAATTTGAGCAAACTCTGGGAGATGGTGAGGGACCGGGGAGCGTGGTGGGCTACAGTTGATGAGGCCGCAAAGAGTTGGACACAACTGAGCGACTGAGCAACAGCAGTGATCTCGATGTGTGTCAGCAGGATTACTCTGGGAGGAGGAGGTGGGGTGGCTTTGGATTAGAACAGGTTAGACGCCAGGAGGTTGTTTATTCTCTTGGAATGTCTCAGCAAGAAATGCCAGCGGCCTGAAGTGTGGAGGGTGGTACCAGTGGAAATGGAGAGAGAAAGAACAAAAAGATGGCTGTGATGAAGCTACTTGGTCATTAGCTGAAGTTGCTCAAAACCAAAATCAAATTCAATAGTAATAAATTTTATAGTGTGACTGACTAGCATTATAGTCACCTCAGTATAAAAAGAAAAGGCTATCGTAATTGATTTTCAAGAGAACCATAAATTTATTAGAATTTCTCAGGCTGGAAATACTTTGATGTTTCCAGATTGTTAATTTGACCTTGTGCTACAAATCTTTAAGTTATCAAAGTCCTTAACTTTCTTGTCTTCTATAAATGACTAAGAAAGTGATTTGGGAATTAGAAATATTAAATTTAGCTAAATGTAGTATGTCTTACTTTGGTTTTCCAGTGATCACATAATACAGTATATCTTAGTAAATGTATAGTCCAGTTTTCACATACATGGTAGCCTGTAGTTGTGGTTTTACTGTTAGAGTTTCCCTGCTAGTTTGATCCCTTACAGTTTTTCTCTGAGGAATATTACAGATTTGAAAGCTTGACTCTTATTTCAAGTTAGTGGTGCTTTACAAAAGTATTTATATCAGTGTGTACTTTGTAAATTAAAAATAGTCCAGACAGCACAGTAACATATAAAATATCATTGCCGTCAACCCCCCCCTCCCGCCCATTTCTCACACCCCCTCAAGCCTGATACGTACATCTTCCACAGAGTTACTACTTCATGTTTTATCTGTTCAGTTATGCACTGGTTTTCTACCTCTGGACGAGTGAGAGCAGAAACTCAGTCTGCTTGGTTAATTGCTGTATTCCTAACACATAATAGGTGCTCAGTAAATAGTTAATTATTGAATGAATGAGTACAGATATTCATCTACAGTTTTGGAGAAAAATATGAAGTGAAGCCATAAAATACCTTCATTTCTTAGGAAACCAGTATTATTTAAATATCCAGTTTAATGGAATTTATTATATACATATCAGTAAAGCACCTTCAGCTATATAGGAAGGCTCTTGGTGTGTAACAATAGCTTTGTAGTAAATAATAGTATTTATTAAAATCAAAGTCTCTATTAATATGTTCATTTTTGTTGGGTAGTGTTCATACTTATCATTATGCATCCATTATTAAGTGTTAGAAGAGAATAATGCTTTTGAGAGCTATGTAAGAGTCTTATTTTCCTGGTAAGATTTCAGTTACTGTTGATTATGTGTTACCGTCATCCAGGTGCTAATTTTATGTAGTAACAATGATTGTTATCTGTGTATTTTTCTTTGCCTAG
Seq C2 exon
ATATGGTACTGGACAACATGATCGCCTCTGGCCAGTTGGACGAGTCCATCAGAGAGAATGTCAGAGAAGCCCTTCTAAAGAGGCACCACCATCAGAATGAGAAGAGGTTCACCAGCCGGATCCCCCTAGTTCGTTCTTTTGCAGACATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227:ENSBTAT00000065868:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.270
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(17.5=85.5)
A:
NA
C2:
PF075658=Band_3_cyto=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]