HsaINT0153496 @ hg19
Intron Retention
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27463113-27465643:-
Coord C1 exon
chr3:27465528-27465643
Coord A exon
chr3:27463271-27465527
Coord C2 exon
chr3:27463113-27463270
Length
2257 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
AATTATTTATTTGTCAATAGGTT
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTATTTTGGCCTCTCCCCAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATTAAAGGTAATGGAAGTGGTGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAG
Seq A exon
GTAATTCTATCATTAACTGAAAATTCTCATAATTATTCTTACTGAGGAAATAAGTAGTAATTTGTGGCTAATATTATTAACATTGATGATAGTAATTTTTTAGTAGACTGGTGCTTACAAACCTGCATGTGATGTCTGTGATATGTTAATTTAAGGTAAAAACTGTGAGAAGGGTTACAGTTAACCTGTGAGTACTTGAATAACTTTACACCATTACTAGTGTTAGAAATTCTGAAAAAGAATATGTGAATAATACGATATTTCCATCCATACCTACCCATAGATATCGTGAAACGTCAGTACTTTTTGAACTACAGTCATTTGTTCTGGAGCTACCACCACTAGAACGTTAATTCTGGGAGTGATGTTACAGCACTAATGATTCAGTCTTTCCTGGGCTGTAATGCGATCCCAGAATTACTGTCTTATGGTGTCAGTACTTTTGGAATGTCACTGAGAAATATATTGGTGCTTCCCCATGGGTAGGTTAAAGGCATGGATTACAAAAAAATACCTATGTGAACTATGATTTTTTTATTTTGGTAAATGAGTATTTTGTTGAAATAGATAAACCTTAATTTAAAAGAACAGGGCAAAAGACTACTAAGTTCAAATTGTAACTGAATGTAAAATGTACTTTATGAGTATTTCTTATGAACAATTGATTCTATCTAGCCACTAATTTTTTAGTAGTATTAATTTGCTATAGTAAAATACCAGATGCTCATGGTATTTTAATATTTTTGTATCCAGTATAAGACTTTTTAATAAATGTAATTATGTCAAGCTGATTTCATTTCTTAAGCCTTTTAGTCTTTGATGAAAAGTCTACAAGATATATTTTACAGAAAAGGAGTTTAAATGGTTTGCATTATAGCTTTGTTGAGTGTTGTAGTCTAAAACTATAGGAAGCCTAGCATTACGGACATTGGCTGTGCAGAAAGGCTGTTGTATTTTAAATTTTTCTGATCTATCCTGATCACATTTTACTGGTGCTCATGTTATTTCAGATAGTGCAAAGTACTTAGTAACAAAATTGCAATTTATTTCTTGTTAAATGAATAAATTAATATAATTTACATTATAGAGTTCCTCTAGGCATGGCAGTTGCCGTTTATTTTTGTTCCTCTGTCACAGTCTTACTTTTTTTTACTTGGCCTATCTTTGTGTATACTTCCTTGTCTCCTGTTGGGCAGGAGTCTGCCTCCTGGCACTGTAGTTGTGGCACACTGGGTGTGGGACTCAAGAGGCCCGCTGTAAGTGCTGGTTTTACTTTTCATAGATAGCCCTGTAAGTGGTTGTTTAGTGACTTGTGTGAAACTGCATATAAATGAAGTTCACATAATTTGGTATCATGTGTAACCTTTTCCTTGTAATTATACACAGAAAGCTAAATTTTACTATTATAGCATTATCATATATCTGTGCCAATAAGGGCTATAGATTTTTGTTTTAAATAAAAACAAGGGGCCAGGCATAGTAATTCATGCCTGTAATCCCTGTGTTTTGGGAGGCTGAGGCAAGAGAATCACTTGGCCAGGAGTTCAAGACCAGCCTGGGCAATATAGCAAGCCCCCCACCTCTACAAAAAAACAACAAAAATTAGCCAGGCGTGGTAGCGCATGCCTGTAGTCTCAGCTACTCGGGAGGCCAAGGTGCAAGGATTGCTTAAGTCCAGGATTTTGAGGTTTACAGTGAGCTATGTTCCTGCCACTGCACTCCAGCCTGGGCAATAGAGTAAGACCTTGTCTCAAAAATACTACTAATGAAATAAAAGTAATGATTTTTTTTCCAGTTAATGAAAAGACTGGGAAATGCCCAGAGTAATTTTTTGGTTTGTTTTTAGGGGGACTTTACATAAAATGTAAAGGTTTTCTAAGGTTAAGTAATATAAAACCATGAATATTTTTTAGCACTGTGTATAATTTCATGAACCATTGTTAGTTTGTGAACTACATATTTGTCCTTAATAGTTTTTAATGAATAGTGCAGTATTCATTGAAAAATTTCTCAAGTTCATGTTTGATAAAGATTGTGACAGTTAAAACAGTAGCATTGATTCAAATAAGTTTGCTTGCTTTTTTGTATGTCTACTCCATTCTTTATATTTGTGAAAATTTTGACATTTTAAACATTCATTAGATCACAAGTTTTGATTAGCAAATAGTAGTCTTATAAAGCAGTTTTTCTTTCCTGTTTCTCTCTAGTCTTACAAATACCACGGAAACTTTATTTTTAATTATTTATTTGTCAATAG
Seq C2 exon
GTTGATATGAATTTCATGAGAAAAATTCCTACGGGTGCTGAGGCATCCAACGTCCTGGTGGGCGAAGTAGACTTTTTGGAAAGGCCAATAATTGCATTTGTGAGACTGGCTCCTGCTGTCCTCCTTACAGGGTTGACTGAGGTCCCTGTTCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-SLC4A7:NM_003615:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.819 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(15.2=75.0)
A:
NA
C2:
PF075658=Band_3_cyto=FE(13.3=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)