HsaINT0154581 @ hg19
Intron Retention
Gene
ENSG00000165300 | SLITRK5
Description
SLIT and NTRK-like family, member 5 [Source:HGNC Symbol;Acc:20295]
Coordinates
chr13:88324870-88331870:+
Coord C1 exon
chr13:88324870-88325080
Coord A exon
chr13:88325081-88327635
Coord C2 exon
chr13:88327636-88331870
Length
2555 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GTTTTCTCTCTCCCTTACAGGAG
3' ss Score
13.03
Exon sequences
Seq C1 exon
CCCGGAACCCGCGGTCGCCACCGCGGCGGCGGCCCCAGGCTGGAGGCGTCCGGGCGCCTCTTTCCTCCAGCCTCTGGGACTGCGCTGCTCGCAGTCTCCTCGCCCTGCCTGGGCTTGAGAAACCTAGTGCATACCCCAAAGAGGGTTTTTGTGTATGTGTGTGTTTTTAAAGGGTGGCTATGATGACTGGGCCTTGGAGATGTGAGACTGG
Seq A exon
GTAAGTCTATCGTTTACTTTGCAAAAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTATGTGGCGGGGTGGTTTTCCTTCCCTCTCCTCCCTCCCCTTCTTCCTCCGTTTTCCCTTCCTTCTCTTTGGGGCGGGGTGGGGGAGGGGGAGCCTCGCGTCCTGGAACTCCGGGTGCTTCTGCCTGGGCTGCTGCTTGAGCAGCTGTGCCCGGAGCCTCCGGTGCGGCCTGGGTGCTGGGCTCCAGTCCGAGAGGCTCCATGCTGCTTACTGCAGGGACGTACAGGGCGGTGATCCAGTATCTAAATTCTTTGGGAGAAAATGAATAGTTCCCCCGCCCCCGCCCTCCAGGAAAAAAAAAAATCTGAGAATCTGAGAATGTTCAGCGCACCCGCGAATTTGCATCGGAGGTGCGTTTCCCCGTCAGAATGTCAGCCTCCCCAGGCTCATTCAACTTTATTTTCTCAAATTTTTGGTCTCCTTTGCTAGCAAGGAGGAGGGGGAAGGGAGTGGGTTGAGAGGAAGCTCTTCGACCCTTGCTAACTAGAACTGAATTAAAGTTGTAAACGCTGGAGTTTAATACTGGCTGGACTGAATTTGCAATGGGCTTTCAGATGGGGTGGGAGGTGAATGGGGGCGGGGAAGCACAGGGAGGGAGGGGGAGGGGACCCAACCTCGCTGAATGGATGTGCGGATTTGATCCAGCGGAGAACTGAAATTTCAAGGTAAACGTTTTGCTTTCACTGGGGTGGGGATGTTTTTGCCGCTTTTAAGCCGGGAGACGTTTACCGTTGCGTTGGGAGGTCGGGGATACTTGCGAGGTTTATGCACTGTGGTTCCAATTCATCTCGACACGTCTGGGTGGCCACACGTGAATGATTCGCAGGCACACTGATACATGTGCGTTTGAATGCAGGGGCGTTTAATAACGCGGGCTGGAGTCGACTTGGGGATCAGGAGCAAGGTCTCCAGGCTTGAACCCGCTGTCTCGGAAACATCTTGGCTTTAGTTTGGAGTTGCAATTCGATATTAGACTTCGGTAGTGAGGCAAAGGCAAGGTTGACCAGAGAAAAGGCATAGGTTCCTAGAGTCCAGCATTTCTATCAAATGTCCTCCACCCCATTAACCAACGCAGCATGCGCGCGCGCGCACACACAAACACACACACACACACACACACACACACACACACGCTCATTCCATTTATGTCCTTCCTTTAAGAGTGCTGCTGTTGATCAGAAGTAGGAAGTGGAAGGAAGCCTTCAAGGGGACAAAAAGAGAGCAAGAAAAAAAAGGGGGAGGGGGTCATATTGATTCCTGTGGGAGATGAAATTCGGATATTAAACAACTGACCTAAGTCGCTTACAGTTCTTCCTCCCACCTTTCTATTTTGCCTCTTAATCAGCCCAGGCGTCCTTTCCCTGAGATTAAAAAAAAGAGAGAGGGGAGCGTTAACAATTAAATGTAATAAGCAACTCCAAAGATGGGGATGCTGTCGAGGTGGTAGTTCCGTGCAAACCTTGCTATTACCGTTGCAAATAGACGCGGAGCCCAAGGTAAGGGAGGCTTTCGTGCTGATCCTTGGTGTACTGATTCCCGGTAAGCGGTAGGAACGTCCTTTTTAAACTCTAGGCATCGGGAGGTATTCGGAGATTGCGGATACCTTCGCTGAGTTCTTTGTAATCCATCGTGCAGAACTATTTCAGTGGCTTAAAGATGCGGTTTGGTAGCGTCGCTGACATGATCAATGAGAAGTGGTCGCAGGGCGCTCTCCGGGAAGCGCTGCTAAGTGGTACCGTGCATGCAATTAGGACGCTGATGTGCTTTAATAGCGTGGTAGTGAAGTCCACCATCAAAGCAAATGCGCTCTCCTTTTTTCTCCTTACTCAAAGCTCCGGGAGACAATTGGTGATTTAAGAGCTTCTTGGGGCTCCTTTGATGCATTATATTACAGCCTTTTTGCCTCTGAAAAGTATCCTTTAGGTTCCCACCGTGGCATTTCTAGCGATGGTTTAAAATACCCCAAGTATTTTGGCTCCTTGCCTCTCTGTGAACATGAGAGACCTTCACGGTGAACTGTTAACTGAAGAGGCTCTGAAAGAAAGAAGGGGGGGTGGGGGCTGGGTATAGGTGAGGTGGGGAACCTTGTAAAATGGTGCTTCTTTTTTCTTAAATTAGAACCATGAAACTGAACTGACAGCCATTTTATGTATATTTATGGATTGGTTTTGAAAAGGGGGGGAGAAGAGAAAACTAAAATGGGACTTTATCTAACCTGCTCTTATCTTGTAAGGAGCAGCATATTTGTGGTGTGCTCATTTAAAAAAATTAATCAACCTTTAAATCAAAATGTATAATAGATTTTAATAAAATCTAGAGAATGTCAATGTTTCACTTGGGGAGGTGTGTCATTTGTATCTCTTCCTTTTGGGTTTTAGAGTAATAATGTTAAGAAAGAGAGAGACTTTCTGACTGATCCCTTAAATTTTTGTCATATTCTGTTATTTCCTTGTTTTCTCTCTCCCTTACAG
Seq C2 exon
GAGGTAAAATGCACACTTGCTGCCCCCCAGTAACTTTGGAACAGGACCTTCACAGAAAAATGCATAGCTGGATGCTGCAGACTCTAGCGTTTGCTGTAACATCTCTCGTCCTTTCGTGTGCAGAAACCATCGATTATTATGGGGAAATCTGTGACAATGCATGTCCTTGTGAGGAAAAGGACGGCATTTTAACTGTGAGCTGTGAAAACCGGGGGATCATCAGTCTCTCTGAAATTAGCCCTCCCCGTTTCCCAATCTACCACCTCTTGTTGTCCGGAAACCTTTTGAACCGTCTCTATCCCAATGAGTTTGTCAATTACACTGGGGCTTCAATTTTGCATCTAGGTAGCAATGTTATCCAGGACATTGAGACCGGGGCTTTCCATGGGCTACGGGGTTTGAGGAGATTGCATCTAAACAATAATAAACTGGAACTTCTGCGAGATGATACCTTCCTTGGCTTGGAGAACCTGGAGTACCTACAGGTCGATTACAACTACATCAGCGTCATTGAACCCAATGCTTTTGGGAAACTGCATTTGTTGCAGGTGCTTATCCTCAATGACAATCTTTTGTCCAGTTTACCCAACAATCTTTTCCGTTTTGTGCCCTTAACGCACTTGGACCTCCGGGGGAACCGGCTGAAACTTCTGCCCTACGTGGGGCTCTTGCAGCACATGGATAAAGTTGTGGAGCTACAGCTGGAGGAAAACCCTTGGAATTGTTCTTGTGAGCTGATCTCTCTAAAGGATTGGTTGGACAGCATCTCCTATTCAGCCCTGGTGGGGGATGTAGTTTGTGAGACCCCCTTCCGCTTACACGGAAGGGACTTGGACGAGGTATCCAAGCAGGAACTTTGCCCAAGGAGACTTATTTCTGACTACGAGATGAGGCCGCAGACGCCTTTGAGCACCACGGGGTATTTACACACCACCCCGGCGTCAGTGAATTCTGTGGCCACTTCTTCCTCTGCTGTTTACAAACCCCCTTTGAAGCCCCCTAAGGGGACTCGCCAACCCAACAAGCCCAGGGTGCGCCCCACCTCTCGGCAGCCCTCTAAGGACTTGGGCTACAGCAACTATGGCCCCAGCATCGCCTATCAGACCAAATCCCCGGTGCCTTTGGAGTGTCCCACCGCGTGCTCTTGCAACCTGCAGATCTCTGATCTGGGCCTCAACGTAAACTGCCAGGAGCGAAAGATCGAGAGCATCGCTGAACTGCAGCCCAAGCCCTACAATCCCAAGAAAATGTATCTGACAGAGAACTACATCGCTGTCGTGCGCAGGACAGACTTCCTGGAGGCCACGGGGCTGGACCTCCTGCACCTGGGGAATAACCGCATCTCGATGATCCAGGACCGCGCTTTCGGGGATCTCACCAACCTGAGGCGCCTCTACCTGAATGGCAACAGGATCGAGAGGCTGAGCCCGGAGTTATTCTATGGCCTGCAGAGCCTGCAGTATCTCTTCCTCCAGTACAATCTCATCCGCGAGATTCAGTCTGGAACTTTTGACCCGGTCCCAAACCTCCAGCTGCTATTCTTGAATAACAACCTCCTGCAGGCCATGCCCTCAGGCGTCTTCTCTGGCTTGACCCTCCTCAGGCTAAACCTGAGGAGTAACCACTTCACCTCCTTGCCAGTGAGTGGAGTTTTGGACCAGCTGAAGTCACTCATCCAAATCGACCTGCATGACAATCCTTGGGATTGTACCTGTGACATTGTGGGCATGAAGCTGTGGGTGGAGCAGCTCAAAGTGGGCGTCCTAGTGGACGAGGTGATCTGTAAGGCGCCCAAAAAATTCGCTGAGACCGACATGCGCTCCATTAAGTCGGAGCTGCTGTGCCCTGACTATTCAGATGTAGTAGTTTCCACGCCCACACCCTCCTCTATCCAGGTCCCTGCGAGGACCAGCGCCGTGACTCCTGCGGTCCGGTTGAATAGCACCGGGGCCCCCGCGAGCTTGGGCGCAGGCGGAGGGGCGTCGTCGGTGCCCTTGTCTGTGTTAATTCTCAGCCTCCTGCTGGTTTTCATCATGTCCGTCTTCGTGGCCGCCGGGCTCTTCGTGCTGGTCATGAAGCGCAGGAAGAAGAACCAGAGCGACCACACCAGCACCAACAACTCCGACGTGAGCTCCTTTAACATGCAGTACAGCGTGTACGGCGGCGGCGGCGGCACGGGCGGCCACCCACACGCGCACGTGCATCACCGCGGGCCCGCGCTGCCCAAGGTGAAGACGCCCGCGGGCCACGTGTATGAATACATCCCCCACCCACTGGGCCACATGTGCAAAAACCCCATCTACCGCTCCCGAGAGGGCAACTCCGTAGAGGATTACAAAGACCTGCACGAGCTCAAGGTCACCTACAGCAGCAACCACCACCTGCAGCAGCAGCAGCAGCCGCCGCCGCCACCGCAGCAGCCACAGCAGCAGCCCCCGCCGCAGCTGCAGCTGCAGCCCGGGGAGGAGGAGAGGCGGGAAAGCCACCACTTGCGGAGCCCCGCCTACAGCGTCAGCACCATCGAGCCCCGGGAGGACCTGCTGTCGCCGGTGCAGGACGCCGACCGCTTTTACAGGGGCATTTTAGAACCAGACAAACACTGCTCCACCACCCCCGCCGGCAATAGCCTCCCGGAATATCCCAAATTCCCGTGCAGCCCCGCTGCTTACACTTTCTCCCCCAACTATGACCTGAGACGCCCCCATCAGTATTTGCACCCGGGGGCAGGGGACAGCAGGCTACGGGAACCGGTGCTCTACAGCCCCCCGAGTGCTGTCTTTGTAGAACCCAACCGGAACGAATATCTGGAGTTAAAAGCAAAACTAAACGTTGAGCCGGACTACCTCGAAGTGCTGGAAAAACAGACCACGTTTAGCCAGTTCTAAAAGCAAAGAAACTCTCTTGGAGCTTTTGCATTTAAAACAAACAAGCAAGCAGACACACACAGTGAACACATTTGATTAATTGTGTTGTTTCAACGTTTAGGGTGAAGTGCCTTGGCACGGGATTTCTCAGCTTCGGTGGAAGATACGAAAAGGGTGTGCAATTTCCTTTAAAATTTACACGTGGGAAACATTTGTGTAAACTGGGCACATCACTTTCTCTTCTTGCGTGTGGGGCAGGTGTGGAGAAGGGCTTTAAGGAGGCCAATTTGCTGCGCGGGTGACCTGTGAAAGGTCACAGTCATTTTTGTAGTGGTTGGAAGTGCTAAGAATGGTGGATGATGGCAGAGCATAGATTCTACTCTTCCTCTTTTGCTTCCTCCCCCTCCCCCGCCCCTGCCCCACCTCTCTTTCTCCCCTTTTAAGCCATGGGTGGGTCTAACTGGCTTTTGTGGAGAAATTAGCACACCCCAACTTTAATAGGAAATTTGTTCTCTTTTTCCGCCCCTCTCCTTCTCTCCTCCCCTCCCCTCCCTTCTCATTCCTTTTCTTTGTTTTTAAAGGATGTGTTTGTATGCATTCTGGACATTTGAATTAAAAAAAAAGTATTGTGATCCTGTAAAGGATCACCATAGATGTGGACAAATCATTAAAATTACAGAGCTATATGATCCATAATTGATTAGTCAAAATAACTTATTGATGAAATATACAAATATTTTATTGTAGCACCTATTTTTATATGCACATTTAGCATTCCTCTTTCCTTCACTATTTAGCCTATGATTTTGCAGAGGTGTCACACTGTATTAGGATCTGCATTTCTAAAACTGACGTGGTATCAGGAAGGCATTTTCAATCATTCAAAATGTGGAGAATTTAATGGCTAAATCTTTAAAAGCCAATGCAACCCACCCAATTGAATCTGCATTTTCTTTTAAGAAAACAGAGCTGATTGTATCCCAATGTATTTTAAAAAATAGGGCAATTGATTGGGCCATTCCGAGAGAATTGTTTGCAAGTTTTGGGTTTTATTAGAAAATATTTGAAAGTATTTTTATTAATGAACCAAAATGACATGTTCATTTGACTACTATTGTAGCCGATTTTCGATTGTTTAACCAAACCCAGTTGCATTTGTACAGATCCACGTGTACTGGCACCTCAGAAGACCAAATCATGGACTGTACAAGTCTCTATACAATGTCTTTATCCCTGTGGGCAGCAAGCAATGATGATAATGACAAACAGGATATCTGTAAGATGGGGCTACTGTTGTTACAGTCTCATATGTATCCCAGCACATGTAATTTTTTAAATAGTTTCTGAATAAACACTTGATAACTATGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165300-SLITRK5:NM_015567:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138551=LRR_8=WD(100=6.4),PF0146213=LRRNT=WD(100=3.5),PF138551=LRR_8=WD(100=6.4),PF138551=LRR_8=WD(100=6.3),PF071726=GRP=WD(100=10.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)