MmuINT0148374 @ mm10
Intron Retention
Gene
ENSMUSG00000033214 | Slitrk5
Description
SLIT and NTRK-like family, member 5 [Source:MGI Symbol;Acc:MGI:2679448]
Coordinates
chr14:111675115-111683134:+
Coord C1 exon
chr14:111675115-111675723
Coord A exon
chr14:111675724-111678937
Coord C2 exon
chr14:111678938-111683134
Length
3214 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CTTTCCTCTCTCCCTTGCAGGAG
3' ss Score
14.01
Exon sequences
Seq C1 exon
ATAGAGCGTCCAAGCTGCCAGGACATGCCACAGGCATAGAGCAACGCTGCTCCTACCCCCCTTGGACCCCTCAAAGGATGTCGGAGATAAAGAGTTGCAAATAATGAGGATCGTGCGCCGCATCTGGGGAGGGATAGCAAAAATCCGCTGCAAACCCCGGGAGCGGTGAAGCCGCCAAGAGGATGCGGGAGCCTTTCAAATACTAATTAGGGGCCGCGATTGCAGGTTTGCCTTGGGGACAGAGGCATCCAGGGTCCGGTGGTCCTGGCGTTTGGGGGAGAAGAGCGCAGCGGAGGAACCGCCGCCGAAGCAGCCCGGGGGCCAGTACCACCTTCTCTCGCCCCCTCACTACCATGTACAGTGTGCGCTGCAAGAAGAAGGCGGGCGATGAACGCACACCCTCGAGCCCCACTCCTTCTGGTTCGTCCTGGGGCGTGCGACACTGACTAGGGGGGAATGTGGTGAAGACGCCGACCCGGAGAGGCTAGGGGGGAGGGGAGGGCGGCCCGCGCGATCCCAGGCCGGAGGGTGCCAAGAGCCCGAGGCGGCTGGAGGGGGCGGCTGCCATCGCTGGGTCGGAGAAAGTTGCCCCCAGTGCAGATGGGAACA
Seq A exon
GTAAGTACCGGCCGGGTCAGGGGGGTACGGCGAGGGGGCCCTGAGATCTGGGGATCGCGCGTGGGAGCGATGGTGCGAGCGAGCGTGAGTGAGAGCGGGTGCGAGCGAGCGCTCGACCAGGCTGACCAGCACGTTGAGCAGGCGACGGGGCCGGGCAGCCCGCTCCGCGTCCCCCTCCTCGGTCTCCCCACTTCCCCTCCCCACTGCGCCCTCCCCGCCCTGCCGGCTCCGGCTCCCAGCCTCAGCCGCGAGCTGCCTTTCCAGCGAGTCGCCGGCCGTCCCCTCCCCCACACCCCACACCCCACTACCCGCCCTGGCTACCGCGGAGAGCGCCAGGGAGAGCCCTTCGGGGAGCCCCGGAACCCGCGGTCGCCACCGCGGCGGCGGCCCGGGGCTAGCGGCGCGGCGTCCGGGTGCCGCTTCCCTCTGGCTGCTCAGCCTGCACGGCTGGCAGCCTTCTGTGTCTGCCTAGGCTTCCAAAAATCGGTGCACACCCCAAAGAGGTGTTTTTCTGAAAGGGTCGCTATGATGACTGGGCCCCTGAGATGTGAGACCGGGTAAGTCCGCGGTTTACTTTGCAAAAGAGGTTTTCTGTGTGTGTCTGGGTGGTATGGCGAAGTGGCTTTCTTTCCATCTCTTCCCTCCCCTTCTTCCTCCCTTTACCCTTCCTTTGCTTTGGGGCGGGGTGGGGGAGGGGGAGCCTCGCGTCCTGGAACTCCGGTTGCCTCTGCCCGAGCGGTGGTTCCAGCAGCTGTGCCGGGAGCCACCGGTCGGGCCTGGGTTTGGGCTCCAGCCGGAGCGGTTCCATGCTGCTTAATGCAGGGATACGGCAGGCAGTGATCCAGGCTCTAAATTCTTTGGGAGCGAACAAACACTGCCCCCACCCCCCGTCCCCGCCCTCTACCTTTTTTTTTTTCTTTTTCTTTTTCTTTCTTTTTTCTTTTCTTTTTTTTTTCTTTTCTTTTTTAATAAAACGAGAACGTGTGATGCACCCCGCGATTTTACATCGGCGCTGCTTTTCCCAGTCAGTCTGTTAGCATTCCCAGCCCATTCAACTTTATTTTCTTAAATCTTCTGTCTCCTTTGATGGCTGGGGGCGACAGGGGAGGGGGCGAATGGAGAGGAGGTTTGGAAAAGGCTGTTCGACCCTGGCTAACCAGAACTGAATTAAAGTTGTAAACGTTCGAATTTAATACTGGCTGGGCACAATTTACAATGGTCTCAGAGATGGGGAAGGAGGTGAATGGGGGCGGGGAAGCACGGCGAGGGAGGGGGAGGGGATCCAATCCAGCTGAATGGACGTGCACATTTGATCCAGCGGAGAACCCAGATTTCAAGGTAAACGTTTTGCTTTCATACAAGGGTGTTTAAAGCCCAAGCCGTCTGCTGTGCTGAGGGGAAGTCTGATATAATAGGGACGTTTCTGTACTGTGTGTGGCTCCACCGATTGGTCTCGATCCCTCTGGGTAGCCAAATGTGAATGATTCATAGCCACTCTTGCACATGTGCGTGCGAATGCAGACGCTCTGAGCCAGGCGGGTTGGTGCGACTTGGTGATCATGTGCAAGGTTTCCAAGCTTGAATCGCTGCTTCAGAAACCTCCTGACTTTACTTCTGGCTTGAGATTCTCATTAGGTTTCGGTAGGGAGGCAGGTATCAGGTTGATCAGATAAAAGGCATAGGTTTTCAGAACCCAACAGTTCTAGCTACACTCCCTAAAGCAACACTAGCACATTAAGCCCATTTACGTACGTCCTTTAAGAGTGCTTCTGTCAACCCAAAGTAATAAGTCAAAAGAATCTCTCCAGTGACAGGAAAGAATGAGGGTGGGGGGTGCGGAGGACTACAAAGTGGTCTGTTGGGGAGATACTACTCAGTAAAACACTGACCTGTGACACTTGTCTAGATTTTGTCTCAATCATTTCTACGAGGAAAGAAAATAAGGGAGGGACCATTGGCATTTAAATATATTAAGCAACTTCAAAGATGGAGATGTTGGCAAGGTTCATTCCAAATCTTGCTCATTCAAAGGGGTTACTTTTGCATGCCATGGCAAACTGACTTGGAGCCTTTGCCTCTGGTCCACGGTTTACTTGTAGCTGCTTCCGGGTAGGCAGTCGAAATGTCCTCTTTCAACTCACAGTCTTCAGAGTTGCTCTGAGATTGCGGATGCCTTTGCTGAGTTCTTTGTAATCCATCGTGCGGAACTGTTACAGTGGTTAAAGATGCGGTTTGGTAGCAGCGTCGCTGGCATGATCAATGAGGAGAAGTGGTCACAGAGCGCTCTAGAAGAAGCGCTGCTAAGTGGCATGGTGCATACAATTAGGGCGTCTGCTGTGCCTAATAGCTGTGGTGAAGTCCACCAGCAAAGCGAAAACGCACACTCCCCGCCCCCCCACCCCCCCCCCCACACACACACACTCACACCTCCATTCTCAGCGACCCGAGGACAACTGGCGATTTAAAAGCTTCTCTTGGCTCTCCCTGATGCCTGATCTTGCATCCCTTTGCCTCAGAAAAGTACTCTTTACATTGCTACGCTTACTTTTCTTATGGTGGTTTAAAATAGCCCAAAGTATGGTGGCCACACGTTTGTCTGTAAAAACGGGAGACCTTAACAGTAAACTGTTATCAGAAGAGATTTTTGGTAGAAAGCAAGGGGCGGCAGGAGTAGAGGTGAGATGGAGAACCTTATTTAAAAAAAAAAAAAAGCTGGTTTTTTTTTTTTCTCTCCTTAAACTGGTGCCATGAAACTGTACTGACAGCCATTTTATGTATATTTGTGGATTAGTTTTGATAGGAAGAGGCCAGAGAATAGTAACACAGGAATTTATCAGCCTTTAACTTTTTTTTTGTAAATTTTTTTATTACATATTTTCTTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCACCCCCACTCCCCTACCCACCCATTCCCACTTTTTGGCCCTGGCGTTTGGTGGCATGCTCATTAGAAAATAACATGAAACTTCAAACCAAACTGAATAATCAATTTTGGTAAAGTCTGAAGGACATCAATATTCCACTCGGGCAGGGGAAGAGGTGCTATATATGTGTATATGCCCTGCTGAATTTCAGACAAAAACTATTGGGAAGGAGAGACTTGCTGATTACCCCCCTTAATTTTTTTTGTGTGATGCTCTGTTATTTCCTTCTTTCCTCTCTCCCTTGCAG
Seq C2 exon
GAGGTAAAATGCACGTTTGCTGCCCCCCAGTAACTTTGGAACAGGACCTTCACAGAAAAATGCATAGCTGGATGCTGCAGACTCTAGCATTTGCTGTAACATCTCTCGTCCTTTCCTGTGCAGAAACCATCGATTATTATGGGGAAATCTGTGACAATGCATGTCCTTGTGAGGAAAAGGACGGCATTTTAACTGTGAGCTGTGAAAACCGGGGCATCATCAGTCTCTCTGAAATTAGCCCTCCCCGTTTCCCAATCTATCACCTCTTGTTGTCTGGAAACCTTCTGAGCCGCCTCTATCCCAATGAGTTTGTTAATTACACAGGGGCTTCAATTTTACATCTGGGTAGCAATGTTATCCAAGACATTGAGACTGGGGCTTTTCATGGGCTGAGGGGTTTGAGGCGACTCCATCTAAACAATAATAAATTGGAACTTCTGCGAGATGATACCTTTCTTGGCTTGGAGAACTTAGAATACCTGCAGGTCGATTACAATTACATCAGTGTCATTGAACCCAATGCTTTTGGGAAACTGCACATGCTGCAGGTGCTTATCCTCAATGACAATCTCTTGTCAGGTTTACCCAACAATCTTTTCCGTTTTGTGCCCTTAACGCACTTGGACTTGAGGGGGAACAGGCTGAAACTTCTGCCCTATGTGGGGCTGTTGCAACACATGGATAAAGTTGTGGAATTACAGCTGGAGGAAAACCCCTGGAATTGCTCCTGTGAACTAATTTCTCTCAAGGATTGGTTGGACAGCATCTCCTACTCAGCCCTTGTGGGCGATGTGGTCTGTGAGACCCCCTTCCGTCTACACGGCAGGGATTTGGACGAGGTATCCAAGCAGGAACTTTGTCCAAGGAAACTCATTTCTGACTACGAGATGAGGCCACAGACTCCTTTAAGCACCACGGGGTATCTACATACCACCCCAGCTTCTGTAAACTCTGTGGCCACTTCTTCCTCTGCTGTTTACAAACCCCCCTTGAAGCCTCCTAAGGGGACCCGCCAGCCCAACAAACCCAGAGTGCGCCCCACTTCTAGGCAGCCCTCTAAAGACTTGGGCTACAGTAACTATGGCCCCAGCATAGCCTACCAGACCAAATCCCCGGTGCCTTTGGAATGTCCTACAGCATGTACTTGCAACCTGCAGATCTCTGATCTGGGTCTCAATGTCAACTGCCAAGAGCGCAAGATCGAGAGCATCGCGGAGCTGCAGCCCAAGCCCTACAATCCCAAGAAAATGTACCTGACAGAGAACTATATCACTGTTGTGCGCAGAACAGACTTCCTGGAAGCCACCGGTCTAGACCTCCTGCACCTGGGTAATAACCGCATCTCCATGATCCAGGACCGGGCCTTTGGGGATCTAGGCAACCTGAGACGCCTCTATCTGAATGGCAACAGGATTGAGAGGCTGAGCCCAGAATTATTCTATGGCCTGCAGAGCCTGCAGTATCTCTTCCTCCAGTACAATCTCATCCGTGAGATCCAGGCTGGGACTTTTGATCCCGTCCCAAACCTCCAGCTGCTATTCTTGAATAACAACCAACTGCAGGCCATGCCTTCCGGTGTCTTCTCTGGCCTGACACTTCTCAGGCTGAACCTGAGGGGTAACAGCTTCACTTCCTTGCCAGTGAGTGGAGTTTTGGATCAGCTGACTTCCCTCATTCAAATAGATCTACATGACAACCCTTGGGATTGTACCTGCGACGTGGTGGGCATGAAGCTGTGGATTGAGCAGCTCAAAGTGGGGGTGTTAGTGGACGAAGTGATCTGTAAGGCGCCCAAGAAATTCGCAGAGACCTACATGCGGTCCATCAAGTCTGAACTGCTATGCCCAGACTACTCTGATGTGGTGGTTTCCACGCCCACGCCCTCTTCCATCCAGGTACCATCCAGGACGAACGCAGCGACTCCAGCTGTGAGGTTGAATAGCACTGGGACCCCCGCAGGCTTAGGAGCTGGGACGGGGGCATCCTCTGTGCCCTTATCCGTGTTGATCCTCAGTCTGCTGCTGGTTTTCATCATGTCCGTCTTTGTGGCAGCAGGCCTTTTCGTGCTGGTCATGAAACGGAGGAAAAAGAACCAGAGCGACCACACCAGTACCAACAATTCCGACGTGAGCTCTTTCAACATGCAGTACAGCGTGTATGGGGGTGGAGGCGGCGGCGGGGGTGGCCACCCACACGCACACGTGCACCATCGCGGGCCTGCGCTGCCCAAGGTGAAGACTCCCGCGGGCCACGTGTATGAATACATCCCTCACCCCCTGGGCCACATGTGCAAGAACCCCATCTACCGGTCTCGAGAAGGCAATTCCGTGGAGGATTACAAAGACCTGCACGAGCTCAAGGTCACTTACAGCAGCAACCACCACCTGCAGCAGCAGCCGCCGCCGCCGCCGCAACAGCCCCAGCAGCAGCCCCCTCCGCAGATGCAGATGCAGCCTGGGGAGGAGGAGAGGCGGGAAAGCCACCATTTGAGGAGCCCCGCCTACAGCGTCAGCACCATCGAGCCCCGAGAGGACCTACTGTCGCCGGTGCAGGACGCTGATCGCTTTTACAGGGGCATTTTAGAGCCAGACAAACACTGCTCCACTACCCCTGCGGGCAGCAGCCTCCCAGAATACCCTAAATTCCCATGCAGCCCGGCTGCTTACACTTTCTCCCCAAACTATGACCTGCGACGCCCCCATCAGTATTTGCACCCGGGTGCAGGGGAGAGCAGGCTGCGGGAACCGGTGCTCTACAGCCCTCCGGGTGCTGTCTTTGTAGAACCGAACCGGAACGAGTACCTGGAGTTAAAAGCAAAACTCAATGTTGAGCCGGACTACCTCGAAGTGCTGGAAAAACAGACCACATTTAGTCAGTTCTAAAAAACAAAGAAACTCTCTTGGAGCTTTTGCGTTTAGAACAAGCAAGCAAGCAGACACACTCGGTGAACCCATTTGATTAATTGTGTCGTTTCAACATTTAGGGCGAAGTGCCTTGGCACGGGATTCTCAGCTTCGGTGGAAGCTAACCGAAAGGGTGTGCAATTTCCTTTTAATTTTACACGCGGGAAACATTTGTGTAAACTAGGCACATCACTTTCGCTTCTTGTCTGTGGGGGAAGACAGAAGGGCTTTCTGGAGGGCGATTTGCATCAAGAGTGACTTGAAACAGGTTGTGGTCCCTTTGGCGGAGCTCTGAAGTTCTGAGGAGGGTGCTGGTGGAAGCAGCTTAGATTCTTCTCATCTTTTTGCTCCTCTTCCCACACTCTTCTCCTTAGAGCATTGGTTGAGAGATTAGCACACCCCAACGTTATAGGAAGTTTGTTCTCTCTCACTTCTCCTCCCACCCCTCCCACCTTCCCTCCTCAATCCTTTCCTTTGTTTTTAAAGGATGTGTTTGTATGCATTCTGGACGTCTGAATTAAAAAAAAAAATCTTGTGATCCAGAAAGGCTCACTCTAGATGTGGACAAATCATTAAAATTACAGAGCTATATGATCCATAATTGATTAGTCAAAATAACTTATTGATGAAATATACAAATATTTTATTGTAGCACCTATTTTTATATGCACATTTAGCATTCCTCTTTCCTTCACTATTTAGCCTATGATTTTCACAGAGGCGTCGTTGCACTGGATTCGCTGCGTTCCCAAAACTAGAGTGATATCAGAAAGGCCTATTAAATATTTAAAGACGTGGAGAAATAATGGTGAAAGTCTTTAAAAGTACATACCACCCATCCAATGGGACCTGAAATTAGAAAGAAAAAAAAAAAAAAACACAAGAAACTAAAAAATGAAGCTGTTTGTATCCCAGTATATAAAAGGAGAAAAGATGGGGCAATGAATTGGTTTGTTCCATGGGGAAATGTGTATACGTTTTTGGTTGTATCAGAGAAGTTTGAAAAATATTTTTATTAGTGAACCAAAATGATGTATTGATTTGACTACTATTGTAGCCGATTTTTTTGATTGTGTAACCAAACCCAGTTGCATTTGTACAGATCCACGTGCACTTGCACTTCAGAAGACCAAATGATGGGCTGTACAAGTCTCTGTATGATGTCTTTATCCCTCTGGGCAGATGCTAATGACAAGCAGGACCTCTGAAAGACAGAACTACTATTGTTACAGTCTCATATGTATCCCAGCACATGTAATTTTTTAAATAGTTTCTGAATAAACACTTGATAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033214:ENSMUST00000042767:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138551=LRR_8=WD(100=6.4),PF0146213=LRRNT=WD(100=3.5),PF138551=LRR_8=WD(100=6.4),PF138551=LRR_8=WD(100=6.3),PF071726=GRP=WD(100=11.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types