HsaINT0157100 @ hg19
Intron Retention
Gene
ENSG00000167182 | SP2
Description
Sp2 transcription factor [Source:HGNC Symbol;Acc:11207]
Coordinates
chr17:46002714-46006323:+
Coord C1 exon
chr17:46002714-46002907
Coord A exon
chr17:46002908-46005089
Coord C2 exon
chr17:46005090-46006323
Length
2182 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TGGGCATCTCCTCTTCCCAGGGG
3' ss Score
7.42
Exon sequences
Seq C1 exon
GTCTGGAGAGCAGGGCAAGAAGAAGCACGTGTGCCACATCCCCGACTGTGGCAAGACGTTCCGTAAGACGTCCTTGCTGCGTGCCCATGTGCGCCTGCACACTGGCGAGCGGCCCTTTGTCTGCAACTGGTTCTTCTGTGGGAAGAGGTTCACACGGAGTGACGAGCTCCAACGGCATGCTCGCACCCACACAG
Seq A exon
GTCAGCCCCCTGCCTTCGGGACCCTCCACCCACAGAGGTCAAATTCCTGCCTCTCCTCCCACCCCCACTCTACCGGCTTTAGCAACATTGACACTCCTGGAACTGCCACACTGAGCAAAAGCTACAGACTATCTAGGGACGACATAGGAAATTATTTTCAAGCCATTCTGTTATCACTGTTGTTTCCCCAAGTAATGGGAAAGGAATAGTTGTCATTGCATGACACAACCTGATAACTTTTGCCATGTCAGCATAGTTATTTAACAAACACTGACATGGTATGCCAAGCACAGTACTAAGCACTTTACTGATTACCTCAGTTGATCCTGGTAAGAACTTTATGGGAAGATACTTTGTTTATGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATGGAGTTTCGTTCTTTTGCCCAGGCTGGAGTGAAGTGGTGCGATCTCAGCTCACTGCAGCCTCCACCCCTTGGGTTCAAGCAATTCTCCTGCCTCAGCTTCTCAAGTAGCTGGGACTACAGGCACCCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACCCCTGACCTCAGGTAATCCACCCACCTTGGCCTCCCAAAGTGCTAGGAATAGAGGCGTGAGCCACTGCGCCGGCCTGTTGATGCCCATTTTACTGAGGCATGGAGAGCTGGCCCAGTCACACAGCTAGTGACTGGTGCGGCCAGGTTCACACCCAGGCCCTGCCATGGCTTTTTGTTTTTTTTTTTTTTTAAGACAGGGTCTCACTCTTTCACCCAGGCTAGAGTGCAGTGGCACAATCTTGGCTCACTGTAGTGTTGAACTCCTGGGCTCAAGTGATTCTCCCACCTCAACCTCCTGAGTAGCTGGGACTACAGGCATGCACCACCACACCTGGCTAATTTTAAAATTTTTTTAGAGACAGGGTCTTACTGTGTTGCCCAGCCTGGTCTCAAACTCCTGGACTCAGATGATCCTCCCTCTTCTGCCTCCCAAAGTGAGATATCACAGTTATAGTTTTAGGTACTAGCAAATCAATGCAAAACTATTAAAAATATTGATCCAAGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCTCTTTGGGAGGCTGAGGCAGGTGATCACTTGAGCCTAGGAGTTCGAGACCAGCCAGGGCAATATAGCGGGAGCCCATCTCTTAAAAAAAAAAAAGGATTATACATCTACCACCTGAAATTGTCCTGGGTATCCACAGTGGTCCACACATACACTTTGGCAAACAGTGCTATAGTGAATGCCCACAGTGAGCAGACACCTGTCCTGGGGCTAGAGGGCTGAGGGAAGCGTGACCCAGAGCTCCGGCTCCTGGCCAGTGTGGTGGGACAGGTCCTACTCCCCAAAAGGCAGAGGAGTCAACACTCCACAGAAAAGCAGTTGGGGTCAACATGGTTCCAACTGAGTGCTCAGGGCTGGCAAGGTCAGGGTGGAGGGGGATTTTCCTGTGATGGGGAGGATGCTGATCCAGGTTCAAAGTCAGAGGGACAAAAGAAGAAAGCAGGCAGACAGCCTTGCACAGGAAGACTCTTAGGTGCAGAGGCTCCAGGGACAAGGAATGGGAACGAAATAGACTGGAGAGGTCAAATGGGGGGTCAGAGAGAAATGAGAATTGATAAAGAGATTTAGATGAGTAGGGGCCAAGCATGATGGCTCGTGCCTGTAATCCCAGCACTTTGGAAGGCCAAGGTGGGCGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGACAACATGGCGAAACCCTGTCTCTACAAAAATACAGGAATTAGCTGGGTGCAGTGGCGGGCATCTGTAGTCCCAGCTATTTGAGAGGCTGAGGCAGGAGAATTGCTTGACCTGGGAGGTGGAGGTTGCAGTGAGTGGAGATTGTGCCACTGCACTCCAGCCTGGCCAGCAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGATATAGATGAGTAAGCACCAGTGAGCAAATGTGAGAGCAGGAGGTGGGCAGAATGTGGTGACAAGGCCATGTCAGCTTGATTGGGTGCACCTCACACGCACCCCACCTTTTTGGGCAGAGACAGGGTCTGTGCACAGGGTCTGTGGGTGATGGGCATCTCCTCTTCCCAG
Seq C2 exon
GGGACAAACGCTTCGAGTGCGCCCAGTGTCAGAAGCGCTTCATGAGGAGTGACCACCTCACCAAGCATTACAAGACCCACCTGGTCACGAAGAACTTGTAAGGCCAACTGCGGCGGGAGGCCCTGAAGATGCAGTCCCCCACCTGTGTCCTCCCTGGGCCCCTGGTGGAAAGGAGCCCTGTGGCTGCCTTGGGCCTGCCCTCAGCCCCACTCCTGTTCTGCAACTGTCCCCACAGGAAGGGGCTCTGTTCCCTGTATTGTCCTCCTTCTGAAGCCCCTTGGCTCTGCCTTGGCCCTTCCCCTCACCACGAGCTCCCGGCCTGCCCAGACTGTGGACACTGGCCGTGCCCAATGAGACGTTCTAAACCAGGACGCGTGGGAACCCTTATTTCCAAAGGAAAAACATGCATTTCACTCCGTCGAGGAGCAAAGTGAGCCCCTACCCCCCACCCCGATCCCCGCTCCCAACACTGCCGGAGTCGCGTCATGCCATGCCCCCTCTCCTGCACCTCCCTGGCCCTGCCGGCCACTGTGGACGCCCTGGGGCTTGGCACCCACCTCTGGAGAAACTCGGGGCCACCTCCACTCCATGTGCCCAGCCCCGCCACAACCTCTCCTCCAGCACATTCCAGCTCTATTTAAAAAGTAAAGACACCCACCGACTCCTGATCCCCCTCTTTTTCTATGGAGAACGTTGCCTTATACTCTACTTCAGATGATGAACACTGTGTACTGTGTGTGCTTTAAAGAAGTTTTATTTAATTGCTCCCTTCTTCCTTTCCTTGTTATTCACCTCCCTGATGCCTGCTTTCAGTTGAGGGTTGGGGGCAATGATGAGCATATGAATTTTTTCTCACTCTAGCAATTCCCTTTTCTAAATGACACAGCATTTAAACTCAAATCTGGATTCAGATAACAGCACCTGCACATCCTGCACCTCCTCCCTCTCCCTTCACCTCACCCCTGCCCGGCCCAAGCTCTACTTGTGTACAGTGTATATTGTATAATAGACAATTGTGTCTACTACATGTTTAAAAACACATTGCTTGTTATTTTTGAGGCTTTTAAATTAAACAAAAATCCAACTTTATTTTTAGTTGTAACTGCTTGAGGTATGTTTTATGAATTAAGTGACAGATTTGTTATCCTTTATTAACGTACTTTGTTGGTCAGCACTGGGCTGACAAAAATTTTTTCTTGCTAATAAATTTAGTTGCCTGAGGCAAAATCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167182-SP2:NM_003110:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=42.4),PF134651=zf-H2C2_2=PU(41.7=15.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(54.2=38.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)