MmuINT0150751 @ mm10
Intron Retention
Gene
ENSMUSG00000018678 | Sp2
Description
Sp2 transcription factor [Source:MGI Symbol;Acc:MGI:1926162]
Coordinates
chr11:96954219-96955968:-
Coord C1 exon
chr11:96955775-96955968
Coord A exon
chr11:96954571-96955774
Coord C2 exon
chr11:96954219-96954570
Length
1204 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AAGATATTTCTTCTTCCCAGGGG
3' ss Score
6.81
Exon sequences
Seq C1 exon
GTCTGGGGAGCAGGGCAAGAAGAAGCACGTGTGCCACATCCCGGACTGCGGGAAGACTTTCCGGAAGACATCCTTGCTCCGGGCCCACGTCCGCCTGCACACTGGCGAGCGGCCCTTTGTCTGCAACTGGTTCTTCTGTGGAAAGAGATTCACTCGGAGCGATGAACTCCAGCGACATGCTCGAACCCACACAG
Seq A exon
GTCAGTTCCCCCATGCCCTTGTCTGTCCTTTGTACACTGTCACCCATGCCTGTTCGGGGCTTCACCATCCACACTACCCAGACCCAAAATCAAAACCAAACCAAACCCAAGCAGTGATAAGAAATGCCAAATGCTGTGTGTAGCATTTTCAGATAAGTTAGTCCCAGGAAGGCCTTGGAGGGTTACCTCAGTGCCAGCCACCTGGCTGAGGTTTGGATAAGTGGCTAGTGGTGGGCAAGCTGGGCTCCTACCCAAGCCCTGGGCTCTCAAGGCCACATACTTTGTAAATGCTTTGTTTTAGGACTTAAGGTCCCTCTGTCTCCACCTCTGTAAAGCCCTGTGAACTAAGCCACCAAGCTGGCCTCCAGTATTGGTTTTGGAGAGAGAGCGATAACAAGATTGAGCCAAGTGTTCAGGCTGCCCTTGCAGCAGTCCTGCCTCAGACTCCAGCTGTTGGGATTACAGGTGTGAGTCACCACACCCAACTCTTTTTGTTTGTTTTAAGACAACATTTTGCTGTACAGCCCAGGTTTACCTTAAACTCGTGGCACTTCTCCTATCTCCTTAATGCTGAGATTACAGGCCTGCTCCGACATGCATGGCCTACTGCAGGCCTGCCTCCATGGCAGCCTAAGTTTACTATTAAGGTTGCTATCACTATTATGTGCTTTAATGCACCCGATAGAAGGTGCCTTAAAGATGTCCTGGGCATGCCCAGTGGTCCACTGGCAGATGCTGTTGTAGGGAATGATGCCCTGCTGAGCAGACACTGAGGTGGGGGACATGCCTCAGCTCCTGGTGAGTCACACCCATCGCAAGCAGAAGCATACACACCCTGATACAGGGTGGGTCGCTGTGGTCCAGACTCAGGGGCTCAGGGCTGAGATGTCTTCCTGTAAGGAGGAAGGTGTAAAGTCCCTGGGACACAGTCCAGAATGAAGCAGGTATGCAGAGGCTCAAGGACAAGCAGCCTGGGCAAAGACCAGAGTGTACCCAAGAACGGAGTGTAGAGAGGTAGATTAGACGGGGCAGCTGGGGCAGAGAGGTGCGACCAATAGACGACAGGAGGAGGCTGTTAGTGGAGTGCAGAGACAAGGCCAAGTTGGCCTTTCCAGGGGCTCTCACTTTCTGGAGCTTCTCCTTTCTGGGACTGGGGCAGTGATACTGCATGCCCTCTTTGGTAAAAGATATTTCTTCTTCCCAG
Seq C2 exon
GGGACAAGCGCTTTGAGTGTGCCCAATGTCAGAAGCGCTTCATGAGGAGTGACCACCTCACCAAGCATTACAAGACCCACCTAGGCACGAAGGGCTTGTAAGGCCAACTGAGGCAGGAGGCCCTGAAGATGGAACACCTCCCATCTGATTGGCCCTGGGTCCATGATGGACAGGTGCCCACGACTGCCCTGGGCAGCCCTCACCCCACTCCTGTTCTGTGGCTGTGTCCCTGCAGAGAGGGACTCTGTTCCTGTGTTCTCCTCCTTCCAAAGGCTCTGCCCCTCTCACCGTGAGCTCCTGGCCTGCCCAGGCCATGGACACTGGCCATGCCCAATGAGACGTTCTAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018678:ENSMUST00000062652:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=42.4),PF134651=zf-H2C2_2=PU(41.7=15.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(54.2=38.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGAAGACATCCTTGCTCC
R:
ACAGAACAGGAGTGGGGTGAG
Band lengths:
354-1558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types