HsaINT0159499 @ hg38
Intron Retention
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149792299-149792729:+
Coord C1 exon
chr7:149792299-149792481
Coord A exon
chr7:149792482-149792578
Coord C2 exon
chr7:149792579-149792729
Length
97 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GACTGTTGGCCCTCCCTCAGTGG
3' ss Score
4.88
Exon sequences
Seq C1 exon
GCTGCTGGTGCCCAGAAGGGCAGGTGCTGGGCAGCGAGGGGTGGTGTGTGTGGCCCCGGCAGTGCCCCTGCCTGGTGGACGGTGCCCGCTACTGGCCTGGGCAACGCATCAAGGCCGACTGCCAGCTCTGCATCTGCCAAGACGGACGGCCCCGACGCTGCCGACTCAACCCGGACTGCGCTG
Seq A exon
GTGAGGCCCTTCCCTCGGGGTCCCTAGTCCTCTCCCTGGACCGCCCAGCTGCACATCCACCACCTCCTTCAGGCTCTGACTGTTGGCCCTCCCTCAG
Seq C2 exon
TGGACTGTGGCTGGTCCTCCTGGTCACCCTGGGCCAAGTGCCTGGGCCCCTGTGGAAGCCAGAGCATCCAGTGGTCCTTCCGGAGCTCCAACAACCCCCGCCCCTCCGGCCGAGGTCGCCAGTGCCGTGGCATCCACCGCAAGGCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558:ENST00000378016:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCATCAAGGCCGACTG
R:
GGTTGTTGGAGCTCCGGAAG
Band lengths:
177-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains