HsaINT0159549 @ hg38
Intron Retention
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149819717-149820781:+
Coord C1 exon
chr7:149819717-149819884
Coord A exon
chr7:149819885-149820649
Coord C2 exon
chr7:149820650-149820781
Length
765 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGG
5' ss Score
5.61
3' ss Seq
TGGGCCCTCCATCTGCTCAGAGG
3' ss Score
4.81
Exon sequences
Seq C1 exon
TGCCCGGGGGCTGGTCACGCTGGAGTCCCTGGTCCTGGTGTGACCGCAGCTGTGGGGGAGGCCAATCCCTGAGAAGCCGCAGCTGCTCAAGCCCCCCATCCAAGAACGGGGGAGCCCCCTGTGCTGGGGAGCGGCACCAGGCCCGCCTCTGCAATCCCATGCCTTGTG
Seq A exon
GTATGGCAATGGTGACAGTCCTGTCCTACCCTTATTGGGCTCCACTCTGCATGGGGCCTGGCTGCTACCTCATGGGCCAGTTTGGAAACTGAGCCCTCTGGGGTGGAGGGCTGGGCCTGGCGTTGGGCAAGGATACCCTGAGCATGTCTGTTGTCTGTGCCAAGGCCCAAGGATCCACCCTGGCCACCCCAACCCACAGGAGAGCTCCTCCTTTCAGCTTTCCCACCCCCGAGGTGGGAAAGAGCCACCAGCCCTGTCACAATTTTTGGAGGCTTTGACAGTGGCACTTTTAGGAGCGGCTGTGGCACTCGTGGGTGGTGGATGGAGCCAGCGGCTGTAGCTGAGCCTGTGCCTCCTCCCGTCACCCCCAAGCTTCAGCTCCTTCTTTAATTGGCCCTCAACAGCCCCATGGCATGGGTTCCCCCGGGGCTCCCCTCCTCTATCCCCACCCATCCTCTGGGTGGACACAAAAGAGGCTCCAGGTGACATTATTGGCTTTTGAGACCCACAAATTTAGTCCAGCTCCACAAACATTTACTGGGTACCGGGTAGGTGCTGAGAACTCACAGGAGGTGAGAGGAACTCACTGTCTACCTAGAATGTCCCAATTCCAGAGTCTTCCCGAGTCTCCCGTGTTTCAGTGAGCACCAGTGTGGGGGATGGGATGGGTCCTGTAGCTTTATGGAGGTAGGGAGTCCCCAGTAGGGCAGAGGGAGGGTTTCTGAGCCCTGGGCCCTCCTGACTCTGGGCCCTCCATCTGCTCAG
Seq C2 exon
AGGCCGGCTGCCCAGCAGGCATGGAGGTGGTCACCTGTGCCAACCGCTGCCCCCGCCGCTGCTCAGACCTCCAGGAGGGAATTGTGTGTCAGGACGACCAGGTCTGCCAGAAGGGCTGCCGCTGCCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558:ENST00000378016:83
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCACGCTGGAGTCCC
R:
CTTCTGGCAGACCTGGTCGTC
Band lengths:
271-1036
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains