HsaINT0160074 @ hg38
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103742405-103745277:+
Coord C1 exon
chr12:103742405-103742554
Coord A exon
chr12:103742555-103745172
Coord C2 exon
chr12:103745173-103745277
Length
2618 bp
Sequences
Splice sites
5' ss Seq
TGCGTATGT
5' ss Score
5.09
3' ss Seq
ATATCCTAATTTGTTTACAGCCT
3' ss Score
6.39
Exon sequences
Seq C1 exon
CCTGCCCTGGAGGACCAGATGCCCCGTGTAATAACCGGGGTGTCTGCCTTGATCAGTACTCGGCCACCGGAGAGTGTAAATGCAACACCGGCTTCAATGGGACGGCGTGTGAGATGTGCTGGCCGGGGAGATTCGGGCCTGATTGTCTGC
Seq A exon
GTATGTGGCGCCGCTTCTCCGTGCTAGAGCTTGTTTTTTGACTGTGTGCTCCCTGTCCTTGTTCATGCCATCTGCCTGACCTGGAGGCATCCTTTTGTCCTTTCTCTCAGCCACACCCCTCCAATCTGCCTGCCCTATGTGTTTATTTCCTCCTTGGATGCATTCCCAGTTTCCAATGAAAAAGCTTCGCCTCTAGAAGTGAAACTTGTCCCCAGCAGCCACTAAGGCAAGATGTGGCTGAACAATGTTCATTCGATCATTCAACCAATGTGGATTTACTAAGTCCTTACTAATAGTGAATGCTGACATTGATTAAGTGCCTACTATGTGCCAGGCACAAATGTTTTACAATTCAATCCTCTTAACCACCCTTTGAGATAGGTACTGTTATTATCTGCAAGTAGCAGATGAAGAAACCAAGGTACAAAGAGCTTAAGTGATTTGCTCAAGAGCCAGCAATTTTTTTTTCTTTTTTTTTTTTTTTTGAGACAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCAGCCTCAGTCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCACCACACCCGGCTAATTTTATATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCCGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAACAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCCGGCTGAATATTTCTAATGTCTAGGGATTTGTGGTTTAGGGACTGACAGGGACAAAATTCCAGCTCTCAAAAGGCTTACAGACACAAATTTTTCTAAAAAATAGTTATAAAGGATATAAAAGCAAAGAAGCAGGTAGAAGGGTGAAGAATGAAAGGAGACATTGTTTTAGAAGACACCTCACATAGGGAATATTTGAGTAGAGACCTAACAGACGCAAGGGGACCAAGCATGAGGTATGAAGAGCAGGCCAATCAAACTTTCGGCAGTGCGGGAAAGACTCCATGACTCCACTGGCCAGTATGGTAGCCACTAGGCACATGTGGCTATCGAGCACCCAAAACGTGTGGCTGAGGAAGCAAATGTTTAATTAAATTTAAATAGCCACGCGTAGATAGTGGACAGTGCAGACCAGAGGAACAGCTTTCCTCCAGGTGAGATGAGCAAGTGCAAAGGCCCTGGGACAGAAGCCAGCTTGGTGTGTACAGAACAGCAAGAAGACCAGGGTGGCTGAGCGGAGTGGGCAAAGAGGAGGAAGAGAGGAAGAGAATGCAATCTGAAGGTCACCAGGGGCCAGATCTTCTTGGCCAATGAAAAGTCTTTAGCTCTATGTGTGACAGGAGGCCAGCAAAGGGTTGTGAACAGAGGGATGTTGTGAAGAGATTAGAAAGGATGGCTCTGGGGAGGGTATCTGTAGGAGAACAGGCACAGAAGCAGGGCCCCTTGGAGAAAATAATGCAACAACCCAGGCCAGCGCTAATGGTGACTTGCACTAGTACGGTAGTGCTGGAGGTGGTGAGAGGTGGTGGAATTGGTACATATTTTTTAATGTTACTTTTTTTTTTTGAGACAAAATCTCACTCTATCACCCAGGCTGAAATACAGTGGCGGGATTATGGCTCACTGCAGCCTCAACCTCCTGGGCTCAAGCAATCCTCCCACCTCAGCCTTCTGAGTAGTTAGGACTACAGGCACATGCCACCATACCCAAATAATTTTTTATTTTTTAAATTTTTTGTAGAGATTGAGTCTCCCTATGTTCCCCAGACTGGTCTCAAACTCCTGGCCTCAAGCAATCCTCCTGCTTCAGCCTCCCAAAGCACTGGGATTACAGGCATGATCCACTGCACCTGGCCACAATTTTACTTTTTTTTTTTTTTTTTTTTTTTAAGACAGGGTCTCACTCTGTTACCCAGACTGGTATACAGTGGTGTGATCACAGCTTACTGTAGCCTCAACATCTTGGGCTCAAGCAGTCCTCCCATCCCAGCCTCCCAAGTAGCTGGGACTAAAGGCGTGTACCACGACATCTGGCTAATTTTTGTTTGTTGTTGTTGTTTTGTAGATACGGGGTTGCACCATGTTGCCCAGGCTGGTCTTGACCGGGCCTCAAGCAATCCTCCCACCTCAGCCGCCCAAAGTGCCGGGATTACAGACATGAGCCACCACACCCAGCCAAAATTTTACTTTTAAATAGATTTCTCCATCAGGAAGCCCCAGATGAGATGATCTCCCTAAATGTTCATTGCGTACCCCATGATACTCTCTACTGTGATTATAACATTCATCTCACTTATAATTATATGATCAACAGCTGGGCACTCTGAGACTGTAAGCCCCATGAGAACAGGGACCTTCTCTATTATGTTTTTCCCTGTAACCTTATCGCTTAGCAGTGCCTGGCCTGTGATAGTCCCTGAATAAGTTATTTTTTAGATGTTTCAATGAATGAATGAATGACTGTGACATAAGCATGGTGCCTCCCACAACTGAAAATGCATAGCAAACAAGGGGTCAGGGAGCTGGTTGATTGGGTCTCAACCCCTGATGACTGACCATATCCTAATTTGTTTACAG
Seq C2 exon
CCTGTGGCTGCTCAGACCACGGACAGTGCGATGATGGCATCACGGGCTCCGGGCAGTGCCTCTGTGAAACGGGGTGGACAGGCCCCTCGTGTGACACTCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011:ENST00000388887:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains