MmuINT0153440 @ mm10
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86859744-86861517:-
Coord C1 exon
chr10:86861368-86861517
Coord A exon
chr10:86859849-86861367
Coord C2 exon
chr10:86859744-86859848
Length
1519 bp
Sequences
Splice sites
5' ss Seq
AACGTATGT
5' ss Score
7.69
3' ss Seq
CTTTCTGATTTCTCTTACAGCCT
3' ss Score
11.01
Exon sequences
Seq C1 exon
CCTGCCCTGGAGGACCAGACACACCGTGTAACAACCGGGGCATGTGTTATGATCAGTACAAACCCACAGGACAGTGCCAATGTCATACTGGTTTCAACGGGACAGCCTGTGAGCTCTGCTTGCCTGGGAGATTTGGTCCTGACTGTCAAC
Seq A exon
GTATGTGGCCTCTTGCCTTTGTTAGTCTGTTTGCCCCTGTATGTTATCTGTCCTTGTCATTGCCACCCACTTGACCTGGGAATAGTAGCTTTCCTTTTCTCCCGCCCACCTGCTCCGTCTGCCTCTTCCCTCCTTGGATGAAGTCCCTTGAAAGAGTCTCACTTCTACAAACTCGCAGCTCCTGAAGCCACCCAGGAACCTGTGGCTAAGCCACACATACTCACTGAAGCCTGCACACACATGGTGACCTCAGGCATTCATCAAGTACCTATCATGTGCCAGTCACATACAGTTTTCCATTCAATCCTTAGCACAACCTGGGAGGTAGGAACTGATGTCAATGGAGAAACTAAGGTGAGAGGAGATGCACTTGCCTACTTGGAATTGTCCTAAGGTTCAGGGTTATAGAGGTTAGCGGGGTATAGGGACAATCTAGCCCTCATCAAAGAGAGTAGAGAAGTGGAAAGTTATAAAAGCTATGGAGGTGTGTAAGCAGATAACAGATCTGAACAAAAGACTCACACAGAGACTCTAAGCTCACAGGAATATCAAGAGCTGGAAGGCAGAACCTGCAGCGATGCTGAAGATATCTTCAGTCAGCACACAGGGCCCCTGAGCACTCAGAACTGTGATGAGGAACTGACATTTGCATCTCAGTTAGTTAACATTGCAATGGCCTACGTCACAAGGACCACCGTCCTTATGCACAAACCAAAGTGGCTTTCCCAGAAGAAAGCAAATGCAGAGGTCTAGACTAGTGGCCTGACCCTGACCTGCCAGAATCAGCAATAGTAGGTAAGGAAGGGGAAGAGAGGAAGGAAATGTAGCCTGAAGGTCACCAGGAGCCACAGCACATAGGGAATTCTAGACCCGTGGAAACTGATCAGCATCTACTCTAGTTTGACCACAGGAGCCACTGAAGGGTTGGGAACAGATTACAAGGGTTCACTGTAATGGCCCTGTGGAGTTCACACAGTAGGAGAGCAAGTGCTGAGATCACTGGGGAGGCTGGGACAGCCAAGAATGGAGGCTGGAGCAGCCATGCATGGAGGCTGGGGTAGCTGGAAAAGCTGGGGTAGCCAGGGAGGCAGAGGCTGGGGCAGCCAGGGAGGCTGGGGCAGCCGGGGAGGCCGGGGCAGCCGGGGAGGCCGGGGCAGCCGGGGAGGCCGAGAGTGGTGATGGCAGCTGGGGCTGACACAGCCATATTAAGTGGTAAGCAGCAGAATTGGTGCGTGGTTTTAAATTTTCTTTATAAATAGATTCCCCAGTGAAGTCGTCACCCCCATCTGTTCTGTGACGTGCCCCATGTCACTCTGCTTCTGTGATACAGCTTTGTGACATTTATTATCACACATTCAGTCCTACAAAAACACAGTCTTCCCTGTCTTGAGCTTCCAGTGCTCTGGCCTGTTGATTTTGGGAATTCTGAGGGAAAGCAATGAGGACTGTGGTAGAAGCCTGGTGGCTTCACACTGAAGGTGCTGTCACTCATTACTGGGCTTTCTGATTTCTCTTACAG
Seq C2 exon
CCTGTGGCTGCTCTGAGCATGGGCAGTGTGACGAGGGGATCACAGGCTCCGGGCAGTGCCTCTGTGAAGCAGGGTGGACAGGCCGCTTCTGTGATGCTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459:ENSMUST00000035288:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACCAGACACACCG
R:
GTGGGAGCATCACAGAAGCG
Band lengths:
246-1765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types