RnoINT0144384 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27388744-27390417:-
Coord C1 exon
chr7:27390268-27390417
Coord A exon
chr7:27388849-27390267
Coord C2 exon
chr7:27388744-27388848
Length
1419 bp
Sequences
Splice sites
5' ss Seq
AGCGTATGT
5' ss Score
6.12
3' ss Seq
ATTACTGATTTCTCTTACAGCCT
3' ss Score
9.11
Exon sequences
Seq C1 exon
CCTGCCCTGGAGGACCAGATACACCGTGTAACAACCGGGGCATGTGCCGCGATCTGTACACACCCATGGGACAGTGCCTATGCCACACCGGCTTCAACGGGACAGCCTGCGAGCTCTGCTGGCATGGGAGATTTGGGCCTGACTGTCAGC
Seq A exon
GTATGTGGCCTGTTGCCTTTGTTAGCCTGTTTGCCCCCTGTATGTTCCCTGTCCTCATCCCCACCATCCACTTGACCTAGAAGTAATCTTTTCTCCCACCTTCTTGCTCCCATACATCTTTTCCCTCCTTGGATGTGGTCCCTTGAAAGAGCCTAGCTTCTAGAAACTCACAGCCCCTGAAGTCACCCAGGAACAGTGGCTGAACCACAGCCACTCAACTGAATCCTGCACACACATGGTGACTACCGGCATTCATCAAGTACCTATCATGTGCCAGGCGCATACAGGTTTCCATTCAATTCATAGCATAACCTCGGAGGTAGGAACTGATGTTGATAAAGGAACCAAAGTGGGAAGAGATTAAGCGATGCACTTGCCTACTTGAAACTAACCTATGTTTCAGGGGTACAGAGGTTGGAGGGGTATAGGGACAATCTGGCCCTCATCAAAGAGGGTAGAGAAGTGGAAAGCTATAGAAGCTGTGTAGGTTTGCGAGCAGATAACAGATCTGAACAAGAGAATCTAAGCTTGCAGGAGTATCAAGAGCCGGCAGACAGAACCTGCAGCAATGCCGAGGACGTCATCAGTCAGCACACAGGGCTGCTGAGCTCTCAGAACTGTGATGAGGAACTGGAATTTGTATTTCAGTTAGTTAACAACGAAACAGCCTATGTCCTTAGGGGCCACCGTCCTCATGCGAAAACCAAAGTGGCTTTTCTGGAGGAAAACAAACACAGAGGTCTAGGCAAGTGGGCCCGGCCCTGACCTGCCAGAAACAGCAAGAGTGGGTAAGGAAGGGGGAGAGAGGAAGGAAAGGAAGCCTGGAGGTCACCAGGAGCCAGCGCACATAGGGAATTCTAGACCAGAGGAAACTGATCAGTGTCTTTTCTAAGTGTGACGGGCAAAGCGGCCAGTGAGGGGTTGGGAGCAGAGGACTGTTGTGAACACATTACAAGGGATCGCTGTAATAGCCCTGTGGAGTTCACACAGTAGGAGAGCAAGTGCTGAGACAGGGCCACCACTGGGGAGGCTGCAGCAGCCATGCATAGAGGCTGGGGCAGCCGGGAGGCCAGCACTGGTGATAGCAGCTAGGACTGGCACACCATACTGAAACAGTAAACGGTAAGCAGCAGAATTGGTGTGTGACTTTGAATTGTCTTTTTAAATAGATTCCTCCAACGAAGTCGCCCCCCCCATCTGTTCTGTGACGTGCCCCACGGCACTCTACTTCTGTGACACAGCATTGTGACGTTTATCATCACACGTTCAGCCATACGAAAACACAGCCTTACCTATCATGAGCTTCCCATGCTCTGGCCTGTGGATTTTGGGAATTCTGAGGCAAAGCAATGACTGCGGTAGAAGCCTGGTGGCCCTCGCGCTGACAGTGCCGTCCCTCATTACTGATTTCTCTTACAG
Seq C2 exon
CCTGCAGCTGCTCCGAGCATGGACAGTGTGATGAGGGGATCACAGGCTCCGGGGAGTGCCTCTGTGAAACAGGGTGGACAGGCCGCTTCTGTGACACTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACCAGATACACCGTG
R:
GTGGGAGTGTCACAGAAGCG
Band lengths:
246-1665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]