HsaINT0160262 @ hg38
Intron Retention
Gene
ENSG00000115145 | STAM2
Description
signal transducing adaptor molecule 2 [Source:HGNC Symbol;Acc:HGNC:11358]
Coordinates
chr2:152148225-152150229:-
Coord C1 exon
chr2:152150145-152150229
Coord A exon
chr2:152148301-152150144
Coord C2 exon
chr2:152148225-152148300
Length
1844 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTCTCTCTTTTTTTTTTTAGAGC
3' ss Score
11.48
Exon sequences
Seq C1 exon
AAAAAGCCACGAATGAGTACAACACTACAGAAGATTGGAGTCTTATTATGGACATATGTGACAAAGTTGGAAGTACTCCTAATGG
Seq A exon
GTAAGATGTCCAGTCATGCTCAGTGAATGTCTAGGAACTTGATAACCAGTGTCTCTTTTTGTGATGTAACTTTGAGAGGAAAATGAGACTTTATCACAGTTGACCCTTGAACAACACAGATTTAAACTGCGAGGGTTCACTTATACATAGGTTTTCTTCCACCTCTGCTACCTCTAAGACAGCAAGACCAACCCCTCTTCCTCCAACTCATGATTTCCTTAACAACATTTTTTTTTCTCTAGCTTACCTTATTGTAAGAATACAGTATATTATGTATATACAAAATATATGTCCATCTACTGTTTATGGTATTGGTGAGGCTTCTGGTCAAGAGTAGGCTGTTAGTTGGCTGGGCGCAGTGGCTCACGCCTATAATCCCAGAACTTTGAGAGGCCGAGGCGAGCAGATCACTTGAGGTCAGGAGTTCGAAACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAGAAATACAAAACTTAGCTGGACATAATGGTGTGCGCCTGTAATCCCAGCTACTTGAGATGCTGAGACAGGAAAATCGCTTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATGGCACCACTGCACTCCAGCCTGGACGGTAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAGAGTAGACTATTAATAGTGAAGTTTTTGGGGAATCAAAAGTTATACACAGATTTTCGGCTGCGTGGGGTGTTGGTGTCCTTAACTTTCATGTAGTTAAAGGGTCAGTTGTTTTACTTTTGGGACATAAAAGTTAAAAAAGCCTGAATGCTGGATTTATGGGATTAATTTACATGAAAAAGAGTTCAACTGAAAATCTGCTATAGTAACACACATAATTAAAGCCTTGACACAATAGGATACATGATAACAATGTATAGGTGAGTTATTTAAGGAATTCCTCTGGGACTTCTATATGTATGGGAACTTTTAAATAATGAAGTAGATAACACAGTAGATAATATAACAAAAAAGTCTTCAAATAATATACATATAAATATAATAGATTAACAATGAAAAAAGTGAATATAAAAAAGTGCTTTTGGGGAGATGTGGCAATTAGCTGAACTATATGTTAGAAATTTAGAAGAGTGATGAAAGCATTTGTTTTAACATTAAAGCTTTTCATAGTACATTCACATGTTTATACTTGAACCTCTTAAAATTGTATATCATGTTAGATTTTTTTCAAGATAAGCTTTTGCTGTTTGAAAGCTAAACCTGTCTTGAAGAAATAGAAAGATCTGGTATACGTCTCTTGTGTTGACAGATCTTTTGTGAAATGGTTTGTCTCTTAATTTTGGAATACACAACATTTGCAACATGCTTTTTTTTTTTAAAGTTCTATGAGCCTATAAACAAAATATTGTGTAAAATCATTTTATAGATTTATTCCTTTAACAATATGAAATTTCCAGGATTTTAGTTTAGTTTATTTTTATTTTATACTTTCTTTATTTTGAGACACGGTCTCTGTCATCCAGGCTGGAGTATAGTGGCATGACACAGCTCACAGCAGCTTCCTGGGCTCAAGCAGTCCTCTTGCCTCAGCCTCCTGAGTAGCTAGGAGTACAGACACATGCCACCATGCCCAGCTAATTTTTAAGTTTTTTATAGAGATGAGATCTTACTTTGTTTTCCAGGCTGGTCTCAAATTCATGGGCTCAAGTGATCCTCCCGCCTTGGCTTCCCGAAGTGTTGGAATTACAGGCATGAGCCATTAAATATAAAATTATTTGGTAATAGAATAATACCTTAATGTTTGAATTAAATTTATCAGTAAATACTTAACTGTCTCTCTCTCTCTTTTTTTTTTTAG
Seq C2 exon
AGCGAAAGATTGCCTAAAAGCCATAATGAAAAGGGTAAATCATAAGGTTCCACATGTTGCTCTGCAAGCACTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115145:ENST00000263904:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.141
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(20.4=100)
A:
NA
C2:
PF0079014=VHS=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains