MmuINT0153605 @ mm9
Intron Retention
Gene
ENSMUSG00000055371 | Stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:MGI Symbol;Acc:MGI:1929100]
Coordinates
chr2:52578936-52580002:-
Coord C1 exon
chr2:52579918-52580002
Coord A exon
chr2:52579012-52579917
Coord C2 exon
chr2:52578936-52579011
Length
906 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCCATTTTTTTTTTTTTTAGAGC
3' ss Score
10.45
Exon sequences
Seq C1 exon
AAAAAGCCACAAATGAGTACAACACCACAGAAGACTGGAGTCTGATCATGGACATCTGTGACAGGGTTGGAAGCACTCCCAGTGG
Seq A exon
GTAAGGAGCCTGCTTGGCCCATGTCTCCGAGAGAAAGGGGTTGACGTGCAGATTTTTATGGGAGCATTTCTTTCAATTTGTTCTGTAACTGCTTACTTAACTAGCTGTTTGGTTTAGGAGATAGACGTGGAGCGTTCCAGTAGGCTAGGTTTTATATTGATTGATTAAAGGCAGTGTTCATTGAAAATCTGGTCTGTGCACGGTGGAAGTGGTGCATGCCTTTAATCCCAGCACACAGGAGTTCCAGGACAGCTAGAGCTGTACAAAGAAACCATGTCTTGAATGCCCAGCTCCCAACCCCACCCCCAACAAAAGAAAATCTGATCTGTGTTTAGACAGATTAACTAAAGGCTTTATAGTGGGGATACATGTAAACCATGAACAAATACATTGGCTATTGGAGGAATTTCTCTGTGATGTAGGCTTTTATGAGAGCCTTTCTAAACACACTAGTTGACATAATGAAGAGTGAAAGTAGACAGTGAATGCTGTTGGTAGGACCCAGCTGCCTGGCTGTTCCCGGAGGGGGGTGTGCGCCGCGTGCTGCACCCTGCTCTCAGAGCTCATCACGGTATCGGGTATCGGTGAGCCTTTTATGATTGCCTGTTGTGCAGGATGAGGCTTTGCTGACAGAAAAGTCCGTCTTTCTGGAGAAAAAACATTTGTATAGTATAGTTCTCTGTGTTGACTAGCTTTTTGGTAAAGTGATTTTTCTCTTGATATTAGAATATGCAGTTTTATAACATCTGTGAATGATAGTATGAAAAACCACACAGACTTACCTAACAAAGATGTTTGCAGAATTTTGTTTTTAAAGCTTTTAGTTAGGAAATATATTGTATTTTTAACACTTGAATTGAAACTCTTACAAAATTCTTAACTTTCTCCCATTTTTTTTTTTTTTAG
Seq C2 exon
AGCAAAAGATTGCCTAAAAGCCATAATGAAAAGGGTAAACCATAAGGTCCCTCACGTTGCTCTGCAGGCATTGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055371-Stam2:NM_019667:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=PU(18.5=92.3),PF145001=MMS19_N=PU(17.2=76.9)
A:
NA
C2:
PF0079014=VHS=FE(38.5=100),PF145001=MMS19_N=FE(43.1=100),PF0298517=HEAT=PU(67.7=80.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: