RnoINT0144540 @ rn6
Intron Retention
Gene
ENSRNOG00000027447 | Stam2
Description
signal transducing adaptor molecule 2 [Source:RGD Symbol;Acc:1311497]
Coordinates
chr3:38253003-38254161:-
Coord C1 exon
chr3:38254077-38254161
Coord A exon
chr3:38253079-38254076
Coord C2 exon
chr3:38253003-38253078
Length
998 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTCTCCCACTTTTTTGTAGAGC
3' ss Score
8.79
Exon sequences
Seq C1 exon
AAAAAGCCACAAACGAGTACAACACCACAGAAGACTGGAGTCTGATCATGGACATCTGTGACAGGGTTGGAAGCACTCCCAATGG
Seq A exon
GTAAGGAGCCTGCTTAGCCCGTGTCTCCAGTGTACATGTGGAAGGGCGTGGGCATGCAGGGTTTTATGGAAACGTCAAAGCGTGTCTTTAAATTTGCTGTGTAACTACTTAATTAGCTGTTTTTTTAGGAGATAGAAGTCAAGAGACCCGCTAAGCTAGGTTTTGTACTGGTCTTGTCCTGAGAAACAGAAGCAGTGTTCACTGATGATCTGGAGGTGGTGCATACCTTTAACACAGCATGAGGGAGCCAGAGACACGGGAGCCTTGGAGTTCAAGGCCAGCCTTGGACTACAGACTGAGTTCCAGGACAGCTAGAGCTGTACAAAGAATGTTGTTGAGTTTCTCCCCAACTCCCCCAACACACACACACACACACACACACACACCTCAAAAAGAAAATCAGATCTGTGTTTACACAGATAACTAAAGGCTTTGATAGCAGGGGTGCATGCTAACCATGAATAAATACATTGACTGTTGGAGGAATTTCTCTGTGATGTAGACTTTTATGAGAGCTTTTCTAAGTACAATAGTTAATATCATGAAGAGTGGAAGTAAAACATGAATGCTTTTGGTAGGACCCAGTTGTTAGGCTGCTCCAGTGGGAGGGATGTGAGGGGATGTGTGCCTCTCGCTGTGTCCCGCTCTTCATAGCTCACCACATGTATCAGTGAGCCTGTTAGGATTGTGTGTTGTGCTAGCTTTTTTCAGGATGAGGGTTTGCTGATAGAAAGGTCAGTCTGTCTGGAGAAAAAACATTTGTATAGTATAATTCTCTATTTTGTCTAGCTTTTTGGTGAAGGGGTTTTTCCCTTAATATTAGAATACACAGTTTTATAACATCTGTGAGTGATAGTATGTAAAACCACATAGACTTACTTAACAAAAGTGTTCGCAGAATTTTATTTTTAAAGCTTTTAGTTGGGAAATACATTATATTTTTAACACTTGAATTGAAACTCTTGAAAAATTCTTAACTTTCTCCCACTTTTTTGTAG
Seq C2 exon
AGCAAAGGATTGCCTAAAAGCTATAATGAAAAGGGTAAACCATAAGGTCCCTCATGTTGCTCTGCAGGCATTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027447:ENSRNOT00000037857:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(20.4=100)
A:
NA
C2:
PF0079014=VHS=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]