HsaINT0161412 @ hg19
Intron Retention
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:11445]
Coordinates
chr19:7703612-7703986:+
Coord C1 exon
chr19:7703612-7703661
Coord A exon
chr19:7703662-7703904
Coord C2 exon
chr19:7703905-7703986
Length
243 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CTGTCCATCCATCTGGACAGGTG
3' ss Score
9.02
Exon sequences
Seq C1 exon
AAATTCTGAGCGGAGTTATTCGGAGTGTCAAGAAGGATGGGGAGTGGAAG
Seq A exon
GTAGGGGTGAGGCAGATGGCTGGGTACCCAGAGGCAGCTCATCATCAGGCCTATGGGGAAGACCCTGAATGTGGGACCCCCAAGAACTGCCTGTCCACATGGGTGGAGTTGGGTGAATGGGTTCTGGGTCCTCCCACCCAGCCAGCCCTTGAAACTGCCCCTCCCACTGCCTTGGCCCCTTCTGGGGCCAGCTGTGGCCTCTTCCGCCTGCTCCTCCATCCATCTGTCCATCCATCTGGACAG
Seq C2 exon
GTGCTTATCATGGATCACCCAAGCATGCGCATCTTGTCTTCCTGCTGCAAAATGTCAGATATCCTGGCTGAGGGCATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944-STXBP2:NM_001127396:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
NA
C2:
PF0099518=Sec1=FE(87.1=100),PF0099518=Sec1=PU(1.7=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)