HsaINT0161412 @ hg38
Intron Retention
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr19:7638726-7639100:+
Coord C1 exon
chr19:7638726-7638775
Coord A exon
chr19:7638776-7639018
Coord C2 exon
chr19:7639019-7639100
Length
243 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CTGTCCATCCATCTGGACAGGTG
3' ss Score
9.02
Exon sequences
Seq C1 exon
AAATTCTGAGCGGAGTTATTCGGAGTGTCAAGAAGGATGGGGAGTGGAAG
Seq A exon
GTAGGGGTGAGGCAGATGGCTGGGTACCCAGAGGCAGCTCATCATCAGGCCTATGGGGAAGACCCTGAATGTGGGACCCCCAAGAACTGCCTGTCCACATGGGTGGAGTTGGGTGAATGGGTTCTGGGTCCTCCCACCCAGCCAGCCCTTGAAACTGCCCCTCCCACTGCCTTGGCCCCTTCTGGGGCCAGCTGTGGCCTCTTCCGCCTGCTCCTCCATCCATCTGTCCATCCATCTGGACAG
Seq C2 exon
GTGCTTATCATGGATCACCCAAGCATGCGCATCTTGTCTTCCTGCTGCAAAATGTCAGATATCCTGGCTGAGGGCATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944:ENST00000221283:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
NA
C2:
PF0099518=Sec1=FE(87.1=100),PF0099518=Sec1=PU(1.7=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains