RnoINT0145644 @ rn6
Intron Retention
Gene
ENSRNOG00000000994 | Stxbp2
Description
syntaxin binding protein 2 [Source:RGD Symbol;Acc:619967]
Coordinates
chr12:2181180-2181541:+
Coord C1 exon
chr12:2181180-2181229
Coord A exon
chr12:2181230-2181459
Coord C2 exon
chr12:2181460-2181541
Length
230 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
ATATCCACCCATCTGGTCAGGTA
3' ss Score
5.77
Exon sequences
Seq C1 exon
AAATTCTAAGTGGAGTCATCCGGAGCGTTAAGAAGGATGGCGAGTGGAAG
Seq A exon
GTAGGGGCTGAGGCAGAATGCATGGATACCCAGGGGCAGCCTTTTACCCAAATCTGTGCAGGTACCCCAAAATGTCAGAGTTGCCTCAGGAATTCCTTGAATGAGCTGTCGATCCATGGGGGTGGGTTTGGGTGGATGGATGTCCCATTGCCTCTGATTCCCCTGGGACCAGCTTCAGACTTTTTTGCATGGCTCACCTCCCCTGTGTCTATATCCACCCATCTGGTCAG
Seq C2 exon
GTACTCATCATGGATCATCCGAGCATGCGAATCTTGTCATCCTGTTGTAAAATGTCAGATATCTTGGCGGAGGGCATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000994:ENSRNOT00000001322:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
NA
C2:
PF0099518=Sec1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]