HsaINT0165223 @ hg19
Intron Retention
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:25774]
Coordinates
chr12:124189079-124191398:+
Coord C1 exon
chr12:124189079-124189235
Coord A exon
chr12:124189236-124191272
Coord C2 exon
chr12:124191273-124191398
Length
2037 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
ATGTGATCTTTCCCTCCTAGGTT
3' ss Score
10.32
Exon sequences
Seq C1 exon
GTGTAGATGCCCCTGATCCAGGTGCAGACCCGCTGGCTAGCAGTGTGAACGGCATGTGCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCATCTCGGATGCTGGCGCGGTGGAAGGGATTACTCAGCAGGAGATACTCGGTGTAGAGACAAG
Seq A exon
GTATGATCACATCTTGGATCACCGTAGTTTAGAGAGAGTCAGGAAAGTTGAGAGCATCCCAAACAATAGGGAAATGTTTATTTAGAAACTGATTGTTTATTTACAACTTGCAATTATTAGCAAGATGTTTATATGCACATATGGAATATGTACGAACTATGTGTATAATGGAGACTTATTCTCACAAGTATTTATAAAGCCATATGTAAGAGAGTCTGCAAGTTATTTTAGGGAGTACAAAGATGAATAAAGGGCCCCTTAGTACTAAGTATATTTTGAAATCCATGGATGTAACTGATAATCTGATCAGAGAATATTGTCTGTGGTTAGAGACTTTGGCAGCAGATAGGTTCAAATCATGGCTGTCCTACTTAGGAGCTGTGTGACACTGGCCAATTACTTAACCTTTCTGAGCTGTAGTTTCCTCCTCTGTAATATGGTGATAATACCTTTATGTATCAAGCCTCCATCAGTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCCGTCTCCAGGCTGGAGTGCAGTGGCAATATCTTGACTCACTGCAACCTCCAACTCTCTAGTTCAAGCGATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGTGCCACCATGTCCAGCTAATTTTTGTATTTTTAGTAAAGACAGGGTTTCACCCTGTTGGCCAGGATGGTCTCAATCTCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCAGCCTGCCTCCATCGGTTTTAAGTGACAGGCGCCCAGTTCATACTGACTTAAGCAAAAAGGGGAGTTTATTGGTTCAAGTTCAGAGTAATCCACATACAGCTAGTTCATGGTTCATGGTTCCAGTGTGGTCAGGGATCTTTTTGTTTTCGTATCTCAGCTCCTCTTCCTTTGGGTTGGCTTCATTCTCAGGGAGGTTCTCCTCAAGAGATGGCAAAGATCAGCACCAGCAATCCAGGCTTATGTCACTGCAGCAAGTCCAGTGGGGAGAAAGCCCCTTTCCTCCTCTTTCCTTTCTTTCTTTCTTTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGCCATCTTGGCTCACTGCAACCTCCACCAACCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTAAGTAGCTGAGGTTACAAGCATGTGGCACCTCGCCTGGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCCAACCTGAGGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGTCACCGTGCCCGGCCCCTCCTCTTTCTCAAAATAGATCTGGGCAGACTTTTATTGGTTCAGTTTAGGTCATGTGCTCCTTTCTGAACCAATCCCTATGACTGGGGCAATGGACAGCTCTTATTGGCTAGGCTCAGGTGATGGGTGCACCTCTGGATTAGGGCCAATTCCTTCTGCTCCACTGAACTGGAAATGGAGAGTGGTGGCTCTGCAAGGGAAAATGGGAGTGCAGTTACCACCTCCGCAGTACTCTTCTGAGGATAACATGAGATGGTGTGTTGCAAGCAAGTTATCTCTGTGCCTCGAACGTGGAAAGCCCTCAATAAGTGGCTAGCTGCTGCTTTTATTATTATATTGTTTGAGAAAAACAGGTGATGAACAAAGGTACCTTTGATAGCACCTGTATACAATGCACTGGCTGGAGAGGAGTGAGACTGACAACAAGACTGGCAGATGTTGCTGGGCGACAGGCCCATGAGGGGTTATTAGGAGTTTCTCTTCTCTTTGGATCTGTCTGTGGAAATGGTCAAAGACCATGGACAAATACTGAGAAAAAACAGCCCAGGTAGAATGCGAAACTTCTTAGGAGAACCTCAGGTTATATTGTGATTGCATCCGTTACCTGCTGTTCTTGGTGGAATAGAACTGAATGGTGGCTATGCTGACCATGTGATCTTTCCCTCCTAG
Seq C2 exon
GTTCTCCTCAGTGAACTGGCAGTACCAGTGTGGGCTTACCTGTGAGCACAAGGCCGACCTTCTCCCTATCAGTGCATCCGTCCAGTTTATTAAAATTCCTGCACAGTTACCCCACCCCCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-TCTN2:NM_024809:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PD(10.0=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)