MmuINT0158432 @ mm9
Intron Retention
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:125074327-125075817:+
Coord C1 exon
chr5:125074327-125074483
Coord A exon
chr5:125074484-125075691
Coord C2 exon
chr5:125075692-125075817
Length
1208 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
TTACAGTTGTCCCCTTCTAGGTT
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTGCCGAAGCCCCTGATACAGGTGCCGACCTGCCCTTGAGCAGCGTGAATGGCGTGTGCCCAGAAGTTCCAGCCCGGCTCTCCATCCGCATTCTCACTGCTGAAGCTGGCTCTGTGGAAGGGGTGGCTCAGCGGGAGATCCTGGCTGTGGAGACAAG
Seq A exon
GTGTGGTCCCTCCTGAGAGTTGCCAAGGTGCCAGGCAAAGAGGAGGAGTGCTAGGCTGGAATCTGCACGCTTGCAAATGGCGATTGTTAAGAGCTGTATTAGTTAATAGCTATGTTAATAGGGCTATGTAAGTGGAAGGCACAGACACCACCCTCAGGAGTATTTGTAAGGCTCTGTATAGGAGCTGCTATAGTGTCAGGGGAGGGCCAGGGCTAGCAAGGGGCTGCTTGGTCCCGAGGGCATTTAACTCTGTGAGTGTGGGTGGCATATTGGTGACAGAATGTGGCCACTAGTTGGAGGCTTTGCCAGGCCCCATAGGTTCAGATCGTGGAGCTGTGTATGACTCTAGGCAGTTTAATATGCAGTAGCCTCATCTAAGAAATGATGACACCTCTGTGCATTGTGTTGTTACCTTATGTGACAGGTTCCACTTAGCAAAGAATGATGGGCGCTATTCAGTTTGGGATTGTCCCCATGCCTGCAAGGTCAGAGAGGGTCTCTTCTTCTGTTTACCCCCAGCTCAGCTTGTCCTGGGACTGTTTTCATGCTCAGGGACAGCCTCCCAGTCTTGTTAGGTCAGCACCAGCCTCACCTCGCCTGGGCTTAGTAAAGAGAGGCCGCCTTGTCAAGAAAGATATAGGCAGACATTTTTGTTGTTGTTGTTTGGCCAGGTCATATTCATGATGGCCAGAATGAGCAACAGCTCTGGCAGGCAGGCTCTGGATTCAGGTTGGTGTCTTCTGACTCACTGACTCACTGAGAGTAGGGAGTGGTGTGTCTCCAACCCCCATGGAAAGTTGGGGAGCAGTTACCAGAATAGGAGAAGAGGTGCTGATTTCCCATCAGACCCCACTTCAGAGTGTTGGGATGGAGCCAAGAATTCTTTTGCTAAGCAACACGGCATTCCCACAGTGCTGCTTTAAGGATTCCTTGCCACGATATGTAAAAAGCACCTTTGTTCTGTGCTGCGGGCCCAGCATGCTTTCGATATATCGATGGTCAGCTGCTGTTTTTATTAGACTGTTGGTGACAAGCAGTCTTTGTGAAGAGAACCTGTATACAGTGACTTGGACCGGAGGAGGGAGCTGGTCACGGCAGCCAGTGATGGGTACTTGTAGATTTTGTGTCTAGACTTGTGGATGCAGCGCTTGGCTTCCTAGACTTTCAATGGTTGGTGGCCACACTACCTTACAGTTGTCCCCTTCTAG
Seq C2 exon
GTTTTCCACAGTGACCTGGCAGTACCAGTGTGGGCTCACTTGTGAGGACAAGGCCGACCTTCTCCCTCTCAGTGCCTCTGTTGAGTTCATTAATGTCCCTGCGCAGATGCCCCACCCCCCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-Tctn2:NM_026486:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGAAGCCCCTGATACAG
R:
GCATCTGCGCAGGGACATTAA
Band lengths:
266-1474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: