BtaINT0146411 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54247521-54248427:-
Coord C1 exon
chr17:54248271-54248427
Coord A exon
chr17:54247647-54248270
Coord C2 exon
chr17:54247521-54247646
Length
624 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGA
5' ss Score
6.99
3' ss Seq
GCGTGACCTTTCCCTCCCAGGTT
3' ss Score
8.87
Exon sequences
Seq C1 exon
GTGTGGATGCCCTTGGTGCAGGCGCAGACCCACCTGACAGCAACGTGAGTGGCATCTGCCTGGATGTTCCCGCGCAGCTGAACATCCGCATCCTCTTCTCGGATGCTGGTGCCGTGGAAGGGATGACTCAGCAGGAGATACTTGGTGTCGAGACTAG
Seq A exon
GTATGATGGCATCGAGGCTAAGTGTGCATTTGCAGGGAAGTTTCCTCAAGAGGTGGCAAAGAAGAACACCAGCAACTTCAGGCTTATATCAGATTAGCAAGTCCGGTGGAAAGAGGGTGCCTCGTTTCCCCATCTTTCTCAAAAATGGTCTAGGAAGACTTTCATTGGTTCAGTTTCAGTCATGTGCTCCATTCTGAGCCAATCACTATGGCCAGGAGAGTAGACAGATCTGATTGACCGGGTGTAGGTGATGAGCGCATTCCTAGGTTCAGGTGAGTCCCCTCGTCTGCTCGACTGAGAGTGGGAGAGGGTTAGTTCCCTGTGGGGAAANNNNNNAAAGCACCAGCATGAAATGAGATGACGGGGGAGAAGAGAAGAAGCAGAACTGGCAAAATGCTGGTAGTGGTTGCAGCCTGTGGTAGGTCCACAAGGGTTCATTACACAGCTGTCTCAGCTTGTGTGTGCAGTCGAACATTTACGTACTTCAAAGGGGGAACGGCAGCACCAGGAAAACGTGAACCGTGTATAGGAGAAGCCCTGCTCATGTTGTGTCGGTTACCCGGTGTTCTCAGCAGACCAGAAGTGAGCGGTGGCTTTGTCGCTTGCGTGACCTTTCCCTCCCAG
Seq C2 exon
GTTCTCCTCCGTGACCTGGCAGTTCCAGTGTGGACTGACTTGTGAGGACAAGGCTGACCTCTTCCCCATTGGCGCATCGGTCCAGTTTATTAAGATACCCGCACAGTTACCCCATCCCCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271:ENSBTAT00000009562:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGATGCCCTTGGTGC
R:
AAGGGGATGGGGTAACTGTGC
Band lengths:
278-902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development