BtaEX0035997 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54246792-54248427:-
Coord C1 exon
chr17:54248271-54248427
Coord A exon
chr17:54247521-54247646
Coord C2 exon
chr17:54246792-54246880
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCGTGACCTTTCCCTCCCAGGTT
3' ss Score
8.87
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTGTGGATGCCCTTGGTGCAGGCGCAGACCCACCTGACAGCAACGTGAGTGGCATCTGCCTGGATGTTCCCGCGCAGCTGAACATCCGCATCCTCTTCTCGGATGCTGGTGCCGTGGAAGGGATGACTCAGCAGGAGATACTTGGTGTCGAGACTAG
Seq A exon
GTTCTCCTCCGTGACCTGGCAGTTCCAGTGTGGACTGACTTGTGAGGACAAGGCTGACCTCTTCCCCATTGGCGCATCGGTCCAGTTTATTAAGATACCCGCACAGTTACCCCATCCCCTTACAAG
Seq C2 exon
ATTCCAGATCAATTTTACAGAGTACGACTGTAACAGAAATGAGGTTTGTTGGCCACAACTTCTATATCCACTGACCCAATATTATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGCCCTTGGTGCAG
R:
CTCGATAATATTGGGTCAGTGGA
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development