GgaEX6013598 @ galGal4
Exon Skipping
Gene
ENSGALG00000023683 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4924850-4926011:-
Coord C1 exon
chr15:4925864-4926011
Coord A exon
chr15:4925277-4925402
Coord C2 exon
chr15:4924850-4924938
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTTACACGTGTGCTTGCAGTTA
3' ss Score
6.55
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GACTTGATCCGAATATCAGTGCGAGCCCTGGAGATCTGAAAGGCATTTGCCCAGATGTTCCTGCCAGTCTGAACATTCGCATCATTTTTGCAGCTGTGGGGGCAGTGCAGGGGATCCCCAGGGAAGAGATACTCGCTGTGCAGATCAG
Seq A exon
TTACTCAACAGTCATCTGGCAGTTCCAGTGCAGCCTTTCCTGTGAAAACACGGCCAGCCTGCTTCCCATCACTGCTGCCGTTCAGTTCATCCGAGTGCCGGCTCAGCCGCCGGTTCCCATGACCAG
Seq C2 exon
ATTTCAGATTAATTACACAGAATTTGACTGTGAGCGAAATGACGTGTGCTGGCCGCAGCTGCTGTACCCGCTGACACGGTTCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683-'23-29,'23-28,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCCGAATATCAGTGCGAGC
R:
CTGTGTAGAACCGTGTCAGCG
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]