HsaEX6069896 @ hg38
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr12:123704532-123707073:+
Coord C1 exon
chr12:123704532-123704688
Coord A exon
chr12:123706726-123706851
Coord C2 exon
chr12:123706985-123707073
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATGTGATCTTTCCCTCCTAGGTT
3' ss Score
10.32
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTGTAGATGCCCCTGATCCAGGTGCAGACCCGCTGGCTAGCAGTGTGAACGGCATGTGCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCATCTCGGATGCTGGCGCGGTGGAAGGGATTACTCAGCAGGAGATACTCGGTGTAGAGACAAG
Seq A exon
GTTCTCCTCAGTGAACTGGCAGTACCAGTGTGGGCTTACCTGTGAGCACAAGGCCGACCTTCTCCCTATCAGTGCATCCGTCCAGTTTATTAAAATTCCTGCACAGTTACCCCACCCCCTGACAAG
Seq C2 exon
ATTCCAGATCAATTATACAGAGTATGACTGCAACAGAAATGAGGTGTGTTGGCCGCAGCTTCTATATCCATGGACTCAGTATTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-'33-33,'33-32,35-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAGATGCCCCTGATCCAG
R:
GAGTCCATGGATATAGAAGCTGCG
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains