DreEX6009627 @ danRer10
Exon Skipping
Gene
ENSDARG00000035633 | tctn2
Description
tectonic family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-751]
Coordinates
chr5:12922451-12925010:+
Coord C1 exon
chr5:12922451-12922598
Coord A exon
chr5:12922736-12922879
Coord C2 exon
chr5:12924922-12925010
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTTTTAAATTGTTCAAATAGTTT
3' ss Score
5.5
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CATCGCAGCAGAACCAGAGTCAGTCAGCAGAGGGCAGCAAAGGAGAGTGTTCAGCCGTGCCCACTCACCTCCACATCCACGTGAAGAGCAGCATCATGGAAATAGTTCAGGGTGTTCCTCAAATGTTTATCCAGTCCATGCAGATCAG
Seq A exon
TTTCATAGAGAGGACATGGAAGATTGAGTGTGGTGTGGGAATGATGGACCCCTGTTTGAACCCAGAGCTCATGCAAAATTTCCCAGTCACCTCTTCAGTGACGTTTACTGACCTTTCTCTTTATTCACAACCACCTAGATCCAG
Seq C2 exon
GTTCAGCATTAACTTCACAGAGTTTGACTGTGACAGGAATGATGTTTGCTGGCCTGAACTGGCCTTTCCTTTCACAACATACTACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035633-'17-19,'17-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCAGCAGAACCAGAGTC
R:
GTGTAGTATGTTGTGAAAGGAAAGGC
Band lengths:
235-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]