RnoEX6064246 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37402417-37404091:-
Coord C1 exon
chr12:37403935-37404091
Coord A exon
chr12:37402650-37402775
Coord C2 exon
chr12:37402417-37402505
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCACAATCGTCCTTTCTTAGGTT
3' ss Score
8.4
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCGTCGACGCCCCTGATGCAGGCGCCGACCTGCCTCTGAGCAGCGCAAATGGCATGTGCCCGGAAGTTCCAACCCACGTCACCATCCGCATCCTCACTGCTGAGGCTGGCGCTGTGGAAGGGGAGGCTCAGCGGGAGATCCTGGCTGTGGAGACAAG
Seq A exon
GTTCTCCACAGTAACCTGGCAGTACCAATGTGGGCTCACCTGTGAGGAGGACAAAGCCGACCTTCTCCCCCTCAGTGCCTCTGTTAAGTTCATTAACATCCCTGCGCAGATGCCCCGCCCGACCAG
Seq C2 exon
ATTCCAGATCAACTTCACAGAGTACGATTGTACCCGGAATGAGCTGTGCTGGCCCCAACTTCTGTACCCTCTGACCCAATATTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'20-21,'20-19,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACGCCCCTGATGCAG
R:
CTTGATAATATTGGGTCAGAGGGT
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]