HsaEX6069896 @ hg19
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:25774]
Coordinates
chr12:124189079-124191620:+
Coord C1 exon
chr12:124189079-124189235
Coord A exon
chr12:124191273-124191398
Coord C2 exon
chr12:124191532-124191620
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATGTGATCTTTCCCTCCTAGGTT
3' ss Score
10.32
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTGTAGATGCCCCTGATCCAGGTGCAGACCCGCTGGCTAGCAGTGTGAACGGCATGTGCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCATCTCGGATGCTGGCGCGGTGGAAGGGATTACTCAGCAGGAGATACTCGGTGTAGAGACAAG
Seq A exon
GTTCTCCTCAGTGAACTGGCAGTACCAGTGTGGGCTTACCTGTGAGCACAAGGCCGACCTTCTCCCTATCAGTGCATCCGTCCAGTTTATTAAAATTCCTGCACAGTTACCCCACCCCCTGACAAG
Seq C2 exon
ATTCCAGATCAATTATACAGAGTATGACTGCAACAGAAATGAGGTGTGTTGGCCGCAGCTTCTATATCCATGGACTCAGTATTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PD(10.0=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAGATGCCCCTGATCCAG
R:
GAGTCCATGGATATAGAAGCTGCG
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)