Special

MmuEX6021011 @ mm10

Exon Skipping

Gene
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:124624318-124625983:+
Coord C1 exon
chr5:124624318-124624472
Coord A exon
chr5:124625681-124625806
Coord C2 exon
chr5:124625895-124625983
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTACAGTTGTCCCCTTCTAGGTT
3' ss Score
9.18
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTGCCGAAGCCCCTGATAGGTGCCGACCTGCCCTTGAGCAGCGTGAATGGCGTGTGCCCAGAAGTTCCAGCCCGGCTCTCCATCCGCATTCTCACTGCTGAAGCTGGCTCTGTGGAAGGGGTGGCTCAGCGGGAGATCCTGGCTGTGGAGACAAG
Seq A exon
GTTTTCCACAGTGACCTGGCAGTACCAGTGTGGGCTCACTTGTGAGGACAAGGCCGACCTTCTCCCTCTCAGTGCCTCTGTTGAGTTCATTAATGTCCCTGCGCAGATGCCCCACCCCCCTACGAG
Seq C2 exon
ATTCCAGATCAACTTCACAGAGTACGACTGTACCCGGAATGAGCTGTGTTGGCCCCAACTTCTGTACCCTCTGACCCAGTATTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-'27-25,'27-24,31-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact

NonCoding

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGAAGCCCCTGATAGG
R:
TGATAATACTGGGTCAGAGGGT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types