GgaEX6013598 @ galGal3
Exon Skipping
Gene
ENSGALG00000023683 | TCTN2
Description
NA
Coordinates
chr15:4972694-4973855:-
Coord C1 exon
chr15:4973708-4973855
Coord A exon
chr15:4973121-4973246
Coord C2 exon
chr15:4972694-4972782
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTTACACGTGTGCTTGCAGTTA
3' ss Score
6.55
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GACTTGATCCGAATATCAGTGCGAGCCCTGGAGATCTGAAAGGCATTTGCCCAGATGTTCCTGCCAGTCTGAACATTCGCATCATTTTTGCAGCTGTGGGGGCAGTGCAGGGGATCCCCAGGGAAGAGATACTCGCTGTGCAGATCAG
Seq A exon
TTACTCAACAGTCATCTGGCAGTTCCAGTGCAGCCTTTCCTGTGAAAACACGGCCAGCCTGCTTCCCATCACTGCTGCCGTTCAGTTCATCCGAGTGCCGGCTCAGCCGCCGGTTCCCATGACCAG
Seq C2 exon
ATTTCAGATTAATTACACAGAATTTGACTGTGAGCGAAATGACGTGTGCTGGCCGCAGCTGCTGTACCCGCTGACACGGTTCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683-'17-23,'17-22,18-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCCGAATATCAGTGCGAGC
R:
CTGTGTAGAACCGTGTCAGCG
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]