BtaEX0035996 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54246792-54251869:-
Coord C1 exon
chr17:54251763-54251869
Coord A exon
chr17:54248271-54248427
Coord C2 exon
chr17:54246792-54246880
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACAACTTAACACCTATCCAGGTG
3' ss Score
5.24
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGAGAATGCTGTTGAACTGCTTGATTCATTAGTACAAGTGACTCATGTTGCAATGAGAGGCAACTCCGATTACAACGATCTCAGTGATGGCTGGCTTGAAATAATAC
Seq A exon
GTGTGGATGCCCTTGGTGCAGGCGCAGACCCACCTGACAGCAACGTGAGTGGCATCTGCCTGGATGTTCCCGCGCAGCTGAACATCCGCATCCTCTTCTCGGATGCTGGTGCCGTGGAAGGGATGACTCAGCAGGAGATACTTGGTGTCGAGACTAG
Seq C2 exon
ATTCCAGATCAATTTTACAGAGTACGACTGTAACAGAAATGAGGTTTGTTGGCCACAACTTCTATATCCACTGACCCAATATTATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271_MULTIEX1-2/4=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATGCTGTTGAACTGCT
R:
CTCGATAATATTGGGTCAGTGGA
Band lengths:
196-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development