HsaEX0064287 @ hg38
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr12:123699704-123706851:+
Coord C1 exon
chr12:123699704-123699810
Coord A exon
chr12:123704532-123704688
Coord C2 exon
chr12:123706726-123706851
Length
157 bp
Sequences
Splice sites
3' ss Seq
ATAACTTAACATTTCTATAGGTG
3' ss Score
7.38
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGAGAATGCTGTTGAAAGACTTGATTCATTAATACAAGCGACTCACGTTGCAATGAGAGGCAACTCCGATTACGCTGATCTTAGTGATGGCTGGCTCGAAATAATAC
Seq A exon
GTGTAGATGCCCCTGATCCAGGTGCAGACCCGCTGGCTAGCAGTGTGAACGGCATGTGCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCATCTCGGATGCTGGCGCGGTGGAAGGGATTACTCAGCAGGAGATACTCGGTGTAGAGACAAG
Seq C2 exon
GTTCTCCTCAGTGAACTGGCAGTACCAGTGTGGGCTTACCTGTGAGCACAAGGCCGACCTTCTCCCTATCAGTGCATCCGTCCAGTTTATTAAAATTCCTGCACAGTTACCCCACCCCCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778_MULTIEX2-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATGCTGTTGAAAGACTTGA
R:
CTTGTCAGGGGGTGGGGTAA
Band lengths:
233-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development