DreEX6009628 @ danRer10
Exon Skipping
Gene
ENSDARG00000035633 | tctn2
Description
tectonic family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-751]
Coordinates
chr5:12919189-12922879:+
Coord C1 exon
chr5:12919189-12919292
Coord A exon
chr5:12922451-12922598
Coord C2 exon
chr5:12922736-12922879
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTAATCAAACGAATGTCAGCAT
3' ss Score
0.06
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AGAAACGCTGCGTTCTCTTCTAGATGGATTAGTGACCGCTACACTCGTCTCCACTTCAGGAAAACCAGACTTTTACAATTTGACGGACTGGGTCAACATTACTA
Seq A exon
CATCGCAGCAGAACCAGAGTCAGTCAGCAGAGGGCAGCAAAGGAGAGTGTTCAGCCGTGCCCACTCACCTCCACATCCACGTGAAGAGCAGCATCATGGAAATAGTTCAGGGTGTTCCTCAAATGTTTATCCAGTCCATGCAGATCAG
Seq C2 exon
TTTCATAGAGAGGACATGGAAGATTGAGTGTGGTGTGGGAATGATGGACCCCTGTTTGAACCCAGAGCTCATGCAAAATTTCCCAGTCACCTCTTCAGTGACGTTTACTGACCTTTCTCTTTATTCACAACCACCTAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035633-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.230 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCGTTCTCTTCTAGATGG
R:
CTGGATCTAGGTGGTTGTGAA
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]