GgaEX0026859 @ galGal4
Exon Skipping
Gene
ENSGALG00000023683 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4925277-4926486:-
Coord C1 exon
chr15:4926383-4926486
Coord A exon
chr15:4925864-4926011
Coord C2 exon
chr15:4925277-4925402
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTAACTCTGTTCCTCGCCAGGAC
3' ss Score
8.76
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
AGGAAGTGTAACTGAGAAACTGAATTCGTTAATACAAGCAACTCATGTTGGAAAGAGACGCAATTCCAACGACAGCAATCTCAACGACTGGGTGGAAATTATTC
Seq A exon
GACTTGATCCGAATATCAGTGCGAGCCCTGGAGATCTGAAAGGCATTTGCCCAGATGTTCCTGCCAGTCTGAACATTCGCATCATTTTTGCAGCTGTGGGGGCAGTGCAGGGGATCCCCAGGGAAGAGATACTCGCTGTGCAGATCAG
Seq C2 exon
TTACTCAACAGTCATCTGGCAGTTCCAGTGCAGCCTTTCCTGTGAAAACACGGCCAGCCTGCTTCCCATCACTGCTGCCGTTCAGTTCATCCGAGTGCCGGCTCAGCCGCCGGTTCCCATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
ENSGALT00000005096fB3371

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTGTAACTGAGAAACTGA
R:
GCACTCGGATGAACTGAACGG
Band lengths:
202-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]