MmuEX6021012 @ mm10
Exon Skipping
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:124623007-124625806:+
Coord C1 exon
chr5:124623007-124623113
Coord A exon
chr5:124624318-124624472
Coord C2 exon
chr5:124625681-124625806
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTAATTTGACATTCCTGCAGGTG
3' ss Score
9.13
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
AGAGAATGTCCTTCAGAGACTGGATTTGCTGACACAAGCAACGCACGTGGCGAGGAGAGGCAACTCGGACTACAGTGATCTGAGTGACGGCTGGCTGGAGATCATAC
Seq A exon
GTGCCGAAGCCCCTGATAGGTGCCGACCTGCCCTTGAGCAGCGTGAATGGCGTGTGCCCAGAAGTTCCAGCCCGGCTCTCCATCCGCATTCTCACTGCTGAAGCTGGCTCTGTGGAAGGGGTGGCTCAGCGGGAGATCCTGGCTGTGGAGACAAG
Seq C2 exon
GTTTTCCACAGTGACCTGGCAGTACCAGTGTGGGCTCACTTGTGAGGACAAGGCCGACCTTCTCCCTCTCAGTGCCTCTGTTGAGTTCATTAATGTCCCTGCGCAGATGCCCCACCCCCCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-'26-24,'26-21,28-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAATGTCCTTCAGAGACTGGA
R:
GGCATCTGCGCAGGGACA
Band lengths:
218-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types