RnoEX6064245 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37402650-37405556:-
Coord C1 exon
chr12:37405450-37405556
Coord A exon
chr12:37403935-37404091
Coord C2 exon
chr12:37402650-37402775
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTAATTTGACATTCCTGCAGGCG
3' ss Score
7.19
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GGAGAATGTCCTTCAGAGACTAGATTTGCTGATCCAGGCAACGCACGTTGCGAGGAGAGGCAACTCGGACTACGGTGATCTGAGCGATGGCTGGCTGGAGGTCATAC
Seq A exon
GCGTCGACGCCCCTGATGCAGGCGCCGACCTGCCTCTGAGCAGCGCAAATGGCATGTGCCCGGAAGTTCCAACCCACGTCACCATCCGCATCCTCACTGCTGAGGCTGGCGCTGTGGAAGGGGAGGCTCAGCGGGAGATCCTGGCTGTGGAGACAAG
Seq C2 exon
GTTCTCCACAGTAACCTGGCAGTACCAATGTGGGCTCACCTGTGAGGAGGACAAAGCCGACCTTCTCCCCCTCAGTGCCTCTGTTAAGTTCATTAACATCCCTGCGCAGATGCCCCGCCCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'18-19,'18-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATGTCCTTCAGAGACTAGA
R:
GCATCTGCGCAGGGATGTTAA
Band lengths:
220-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]