HsaINT0167083 @ hg19
Intron Retention
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:11805]
Coordinates
chr21:32595722-32598266:-
Coord C1 exon
chr21:32598042-32598266
Coord A exon
chr21:32595908-32598041
Coord C2 exon
chr21:32595722-32595907
Length
2134 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
CCGTGTTTTCACTACCATAGATC
3' ss Score
8.7
Exon sequences
Seq C1 exon
ACCACTAGCCAGACGGAGCTTGAAAACTGGATCACCGCCATCCACTCTGCCTGCGCCACTGCGGTCGCGAGGCACCACCACAAGGAAGACACGCTCCGACTCCTGAAATCAGAGATCAAAAAACTGGAACAGAAGATTGACATGGATGAAAAGATGAAGAAAATGGGTGAAATGCAGCTGTCTTCAGTCACTGACTCAAAGAAAAAGAAAACAATATTAGATCAG
Seq A exon
GTAATCGTTCTTCCGTGTTTAGGTCCGGACAAAATTGTTAGGTCTCTAAAAGGGTTTTTTTTTTTTTTTGCTGTTTTGGAATCGTGAAACATCATCGGATATCTCCTCGACAGCCTGTCATCCAGGATGCTAAGTTCTTTACTGTGACTGTCAGTGTTCTTCACCCTTTGTTCATAGCTGATTGTTAATAGCTAAACGGAACAATATTACATTGAATGAAAGACAGAAACCCAGTAGAGGAGCCCTGGCCCCCATCAATGATGTGCTCTTCTAGGGGATCTGTGTAATTAGAAAGTTTGCAATTTCATTTCCCATGTTATCAGACTGACTTGGAGTTCTCTTATGGTGGGGACTCATTTCTGACTCCTCAGTAAATTTTGAATTCTTAATTTGGAAAAGGTAACGTACATTAAAAATATATATCTGGCCAGGTGTGGCGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCATACTCGCTTGAGCCCAGGATTTCAAGACCAGCCTGGTCAACATGGCAAAACCCTATCTCTACAAAAAAAATACAAAAATTAGCCGCAACTGTAGTCTCAGGAGGCCGAGAGGAGAGGATCGCCTGAGCCTGGGAGGCAGAGGGTGCGGTGGGCCAAGATTGTGCCATTGCACTCCAGCCTGGGTAACAGAGCAAGCTCTCTCTCTATATATATAGATATATATAGAGAGAGATATATCTATCTATCTATCTAGATCTAGATATATAATTGCTTTATATGTGCATAAGTATATTTCATGCTAAAGAAAAAAGATTTAGTGAAATGAACAAAGCACATTTTTGCCTGCTATTCAGCTGTCAGTAATAGCCATCTGGTAGTGCTTTGACACTTTGTCCTAATGCTCAGGAAATAATTACATGAATAAATGATATTTAAATCATTGAACAATTGACATGGGCCTTCCACATTTCTCTCCCTCTGGGGTTTCCCTTTGTTACCTGACATTGTATTTTTTTAAATTGAGGCAAAATTCACACAATGTAAAATCAACCATTTTAACACGAACAATTCAGTAACATCGAGTACGTTTACCATGTGGTGCAAACACTCCCCCATCTAGCCCTGAAATTGTTAATCTGGCCCAAAATGTAACCCTGTACCTGTGAAGCAGTTGCTCCTCTCTGCCCCCGGCACTCTGTCTTCATGGATTTGCCTATTCTAGATATTTCATATGAATGGAATTGCACAGTACGTGGCCTTTTGTGTCCGGCTCCTTCCCTGAGCTTCATGTTTTGGAGGTGGATACACATGGTAGCATACATCAGCACTTTACTCCTGGGTTCTGGTTGTACGTATACACCATGGTTTGTTTATTGGCCATTTCTTGATGGACATTCAAGCTGTTTCCACCTTTTGCAAACAGTGCTGCTATGAACATGTGTGTACAGTGATATATATTTTGTTGAAGCAAAAAGGGAGATTTCAACCATTCCTCATTATCTGTACCATTGTCAGCATCACTGCACCTTCACTCTATGCCAGACCTTGTACTTATGCTTGTATTATCTTTTTCAAACATCCCAACAGCCTAAGGAGGTAGTTATTATTTTGCCACTTTGAAAAATAAGGGAATGTCTCAGAGACATGCTACAGTTGGAACTTTGTATTCCAGAGTCTGGGTCTCCACCATCTTGTGTTCCACTTCCACCCTGTGTTCCGGGCTACCCCGCTCTTCCCAAAAGCACTTGGTCCATTGCTTCTAGCCTTTCATTCGTCTCACTTTTCTTTGTATGAAAACCTACCTCTTGTTAAGTCATATAGTTCTTTGGTGATGGAAATCTCTACATTTTTACTTCTGGAGTCTAGAGTTTGTGGTCCAGATCTTGGAGTTGATAGACCTATCATGCCCCCAGTACGAACTCCAAGATAGGAGGGAACAGAGGAACTTGTCACTTTCTATTTATGATGCTGAATTTATGGCTATAGATCTTGCAGAAGAAACATAAGTAACTAAGAAACTTAGGTACCTGTTGTTTATTCCTTAGGATTATAATGAATGCCTTTACGACATATAGATCTGTATAGGATAAAGATATTAGCATTTGTTTCCCATTTTCTCACTTTTTCTTTTCCCGTGTTTTCACTACCATAG
Seq C2 exon
ATCTTTGTCTGGGAGCAAAATCTCGAGCAGTTCCAAATGGACCTGTTTCGTTTCCGCTGTTATTTAGCCAGCCTTCAGGGTGGGGAGCTGCCAAACCCCAAAAGGCTTCTCGCTTTTGCAAGTCGACCAACGAAAGTGGCCATGGGCCGCCTTGGAATCTTTTCGGTATCATCGTTTCATGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299-TIAM1:NM_003253:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.8=24.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)