MmuINT0160110 @ mm9
Intron Retention
Gene
ENSMUSG00000002489 | Tiam1
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89865479-89867979:-
Coord C1 exon
chr16:89867755-89867979
Coord A exon
chr16:89865665-89867754
Coord C2 exon
chr16:89865479-89865664
Length
2090 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
CCCCCCCCCCACGACTGTAGATC
3' ss Score
7.27
Exon sequences
Seq C1 exon
ACCACGAGCCAGACAGAGCTGGAGAACTGGATCACCGCCATCCACTCTGCCTGCGCAGCTGCCGTCGCAAGGCACCACCACAAGGAGGACACGCTCCGCCTCCTCAAGTCGGAAATCAAGAAGCTGGAGCAGAAGATCGACATGGACGAGAAGATGAAGAAGATGGGGGAGATGCAGCTGTCTTCCGTCACCGACTCGAAGAAGAAGAAGACCATCCTAGACCAG
Seq A exon
GTGACCGACCGCCTTTGTGCGTCTGGAGCGGGCCAGATTTGTTAGCGCTTTTGTTTTTTTGTTGCTGTCTGGGGATCCTGAAACAGCTTCTGTTCTCTCGGAGACAGCCTGTCACCCAGACTGGTAAACTCTTTATTGTGACTGTCAGATTTCCTCGCCCTTTGTTCAGAGTTGATTGTTTTTGCGCTGACGGGAACGATAAGACATTGAACAGAAGGCAGAAATGGGAGGGGAGGGCCTTCCGAATCCTTCCAGTCCACGTGTTTCCAGGGGAATCTGTGCCATTTGAAATCTATGATGTCCTTCCTCACCTTATCATAGGGCTCACCTGTGCGGAGGATTCCTGGCTCCTCAGTGAACTCACATTTAAAAAGTGACGGGTGTTTCTCAAAGTCCACTCAGCTCGCCCTCACTACACATTGGGAATTGGTTTCAAGAACCTTGCAGAATCCCAAATCTGTGTGTGCCCTGGTCCTTGACATAAAAGATGGCGTCGTATGTTTTCATAACCCATCCCTGCATCATTTGTGGTACCTGGTAGATATGTTATGTAAATAATTGCTGTGCTGTGGTGTTTAAGGAATAATGACAAGGCAAAAGTCTGTACGTGGTCACTATAGCTATAGGGTACAGAGTGCCCTTTGTTCTATTCTTTCTGTTATTGGTTGCTGTAAATTCACAAAGCAACTCACAAGGCAAATTCGCATAGCAAAAAAACCATTTGAATCGAACAACAGCTTAGCGGTCAGCGCATGTGAGATATTAGGTGCCACTTCCCACATCCAGTTCTAGAAGGAACCTAACTCCGTGTTTGCCTCCCTCAGCCTCTGGCTCCCTGTCTTGAGAGGTTTCCCTTTGAGTTGTTCCCTAATAATGTATTCGCTTAGTATGCGACCCTTTCGCCTGCCTTCTTCCCTTAGCAGGGCCTCTTGGAGTTGATGTGCACCCCCTCGCTTACACATCGGCACACCTTCCTCCTTCGGGCCCCGTTCCTTATTCCCTGTCCAGACACACCCCTGGACCGTCTCTCCTTAGATGAGCATTTGAGCCATTTGCAGCTTCTCGGCTGCTGGGAATACTGCCGTCACGAGCGTCTGGGTTCTCACGGAGTTTTACCAGAGATTAGAAAGGGAGATGTCACTGATGACCCCTCAGCTCTCACGTTGTCCTTTTTGAAAATTTGACTTTAAGTGTGTGAGTGTCGTTTGTGGCGTGTCTGGGCATCGCGCACATTCTTGGTGCCCACAGAGGTTAGAAGAGGGCATCGGAACCGCTAGAGATGAAGTTATAGGCAGTCATGAGCTGTCCCGTGGGTGCTGGGAACAGACCCCGGGTCCTGTCAGAGCAACAAGAGCGTTTAGCTGCTGAGTCATCTCTCCAGCCCCAGGAGCTTACAGTCTGTGTCAGCGTGTTATTCTTGAATGCACCTCACCCCTCTGTGATCTTGCTTGAATGTCATATCAGTAGCTAGAGGATATCTTGCCACTTTGAGTGACAGAGACACGTGTGTGGGCACTAGCTGTGGGTGGGACCCCTTACCCAGTATCTGGGTCTCCACCACTGACAGCTTCCTACCTCCAACCCTTTCTTACCACCCCGTGCTTACCGTGTTTACCAAAGCCTTTAGTTTATTTGCTTTTGACCTTTAACTGACTTTCTTTTTCTTTTCTTTCCTTGGTAAAAGCTCTCTCTTAGCCCACATGAAAGTTCCCTGGTACTGGGAATCCCTCCATTTTCATTCCTTCCATCTTAGGTTAGTGGTCAGAAATTACACACACACACACACACACACACACACACACACACACACTCTCCATGACCCATGACATCTTGGCTAGGAGAGCACCAGTAACTAACAATGTACTTTGTTTCTGATACTGAGTTTATGGTTACAGGTCTTTGTAAACAAGAGCGCATGCACCCTAAGAGACACCCCCCCCCCCGTTGTTTACCCTCTGGGATTATAATTGTGCCTTACGATAAACAGATCTGCAAGGCTCTTGGAGAAGACGGTGGCTAACGTTTGCTCTTACCTTCCCTGACCCTTTTCTCTCCCCCTGTCTCCTCCCCCCCCCCCCCCACGACTGTAG
Seq C2 exon
ATCTTCGTTTGGGAGCAGAACCTCGAACAGTTCCAGATGGACCTGTTCCGATTCCGCTGTTACCTCGCCAGCCTCCAGGGCGGGGAGCTGCCAAACCCCAAAAGGCTGCTTGCTTTTGCGAGCCGGCCCACGAAGGTGGCCATGGGCCGCCTCGGGATCTTCTCCGTGTCATCTTTTCATGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489-Tiam1:NM_009384:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.8=24.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: